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https://github.com/metabarcoding/obitools4.git
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94b0887069
### Memory-Aware Batching - Replaced single batch size limits with configurable min/max bounds and memory limits for more precise control over resource usage. - Added `--batch-mem` CLI option to enable adaptive batching based on estimated sequence memory footprint (e.g., 128K, 64M, 1G). - Introduced `RebatchBySize()` with explicit support for both byte and count limits, flushing when either threshold is exceeded. - Implemented conservative memory estimation via `BioSequence.MemorySize()` and enhanced garbage collection to trigger explicit cleanup after large batch discards. - Updated internal batching logic across `batchiterator.go`, `fragment.go`, and `obirefidx.go` to consistently use default memory (128 MB) and size (min: 1, max: 2000) bounds. ### Linux Build Enhancements - Enabled static linking for Linux binaries using musl, producing portable, self-contained executables without external dependencies. ### Notes - This release consolidates and improves batching behavior introduced in 4.4.20, with no breaking changes to the public API. - All user-facing batching behavior is now governed by consistent memory and count constraints, improving predictability and stability during large dataset processing.
15 lines
399 B
Go
15 lines
399 B
Go
package obioptions
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// Version is automatically updated by the Makefile from version.txt
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// The patch number (third digit) is incremented on each push to the repository
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var _Version = "Release 4.4.22"
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// Version returns the version of the obitools package.
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//
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// No parameters.
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// Returns a string representing the version of the obitools package.
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func VersionString() string {
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return _Version
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}
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