mirror of
https://github.com/metabarcoding/obitools4.git
synced 2026-03-25 13:30:52 +00:00
c30a22d356
Update GitHub Actions workflow to use setup-go v5 and align with latest tooling practices. Update version to 4.4.15 in version.txt and pkg/obioptions/version.go. Add comprehensive documentation for the canonical super-kmer strategy, including: - Analysis of index v1 limitations - Experimental observations on super-kmer efficiency - Detailed pipeline for building v3 index - Explanation of minimizer-canonization - Description of unitig construction and frequency filtering - Storage format specifications for v3 - Aho-Corasick matching implementation This change introduces a major improvement in index compactness and performance through the use of canonical super-kmers, unitigs, and efficient storage formats.
20 lines
379 B
YAML
20 lines
379 B
YAML
name: "Run the obitools command test suite"
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on:
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push:
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branches:
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- master
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- V*
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jobs:
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build:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout obitools4 project
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uses: actions/checkout@v4
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- name: Setup Go
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uses: actions/setup-go@v5
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with:
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go-version: "1.23"
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- name: Run tests
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run: make githubtests
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