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Eric Coissac
8c7017a99d
- Update obioptions.Version from "Release 4.4.29" to "/v/ Release v5" - Update version.txt from 4.29 → .30 (automated by Makefile)
29 lines
1.4 KiB
Markdown
29 lines
1.4 KiB
Markdown
# `FormatHeader` Function Type in `obiformats`
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The `obiformats` package defines a core functional interface for sequence formatting within the OBITools4 ecosystem.
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- **Package**: `obiformats`
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Provides utilities for formatting biological sequences according to various output standards (e.g., FASTA, GenBank).
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- **Type Definition**:
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```go
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type FormatHeader func(sequence *obiseq.BioSequence) string
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```
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- A `FormatHeader` is a *function type* that takes a pointer to an `obiseq.BioSequence` and returns its formatted header as a string.
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- **Semantic Role**:
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Encapsulates the logic for generating *header lines* (e.g., `>id description`) in sequence file formats.
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Decouples header formatting from core data structures (`BioSequence`), enabling modular and reusable format adapters.
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- **Usage Context**:
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- Used by writers/formatters to produce standardized headers when exporting sequences.
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- Allows custom header generation (e.g., for MIxS-compliant metadata, user-defined tags).
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- Supports polymorphism: different `FormatHeader` implementations can be swapped per output format.
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- **Dependencies**:
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- Relies on `obiseq.BioSequence`, the core sequence data model (ID, description, annotations, etc.).
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- **Design Intent**:
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Promotes clean separation of concerns: data (sequence) ↔ formatting logic.
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Facilitates extensibility for new output formats without modifying core types.
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