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https://github.com/metabarcoding/obitools4.git
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Eric Coissac
8c7017a99d
- Update obioptions.Version from "Release 4.4.29" to "/v/ Release v5" - Update version.txt from 4.29 → .30 (automated by Makefile)
31 lines
1.3 KiB
Markdown
31 lines
1.3 KiB
Markdown
# Obilib Module Overview
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The `obilua` package provides Lua bindings for core OBIL (Ontology-Based Information Library) functionality, enabling scripting and extension of ontological data processing within a Lua environment.
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## Core Components
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- **`RegisterObilib(luaState *lua.LState)`**
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Main registration function; initializes and exposes OBIL modules to a given Lua state.
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- **`RegisterObiSeq(luaState *lua.LState)`**
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Registers sequence-related operations (e.g., parsing, manipulation, and analysis of biological sequences like DNA/RNA/proteins).
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- **`RegisterObiTaxonomy(luaState *lua.LState)`**
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Registers taxonomy utilities (e.g., classification, lineage lookup, and hierarchical navigation of taxonomic trees).
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## Semantic Capabilities
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- Enables *semantic querying* over structured biological data via Lua scripts.
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- Supports integration of ontological reasoning (e.g., using GO, NCBI Taxonomy) in dynamic workflows.
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- Provides extensibility: new modules can be added by implementing `Register*` functions.
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## Design Principles
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- Minimal, non-intrusive API: only exposes essential high-level operations.
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- Leverages `gopher-lua` for seamless interoperability between Go and Lua.
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## Use Cases
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- Custom annotation pipelines in bioinformatics.
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- Interactive exploration of ontologies and sequences (e.g., via REPL or embedded Lua engines).
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