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cd0c525f50
### Enhancements - **Rope-based parsing**: Added direct rope parsing for FASTA, EMBL, and FASTQ formats via `FastaChunkParserRope`, `EmblChunkParserRope`, and `FastqChunkParserRope`. Sequence extraction now supports U→T conversion and improved line ending detection. - **Rope scanner refactoring**: Unified rope scanning logic under a new `ropeScanner`, improving maintainability and consistency. - **Sequence handling**: Added `TakeQualities()` method to BioSequence for more efficient quality data handling. ### Bug Fixes - **Compression behavior**: Fixed `CompressStream` to correctly use the `compressed` variable instead of a hardcoded boolean. - **String splitting**: Replaced ambiguous `SplitInTwo` calls with precise `LeftSplitInTwo` or `RightSplitInTwo`, and added dedicated right-split utility. ### Tooling & Workflow Improvements - **Makefile enhancements**: Added colored terminal output, a `help` target for documenting all targets, and improved release workflow automation. - **Release process**: Refactored `jjpush` into modular targets (`jjpush-notes`, `jjpush-push`, `jjpush-tag`), replaced `orla` with `aichat` for AI-assisted release notes, and introduced robust JSON parsing using Python. Release notes are now generated and stored in temp files for tag creation. - **Versioning**: `bump-version` now supports the VERSION environment variable for manual version setting. - **Submission**: Switched from raw `jj git push` to `stakk` for PR submission. ### Internal Notes - Installation instructions are now included in release tags. - Fixed-size carry buffer replaced with dynamic slice for arbitrarily long line support without extra allocations.
15 lines
399 B
Go
15 lines
399 B
Go
package obioptions
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// Version is automatically updated by the Makefile from version.txt
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// The patch number (third digit) is incremented on each push to the repository
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var _Version = "Release 4.4.20"
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// Version returns the version of the obitools package.
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//
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// No parameters.
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// Returns a string representing the version of the obitools package.
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func VersionString() string {
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return _Version
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}
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