40 lines
801 B
Plaintext
40 lines
801 B
Plaintext
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#
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# Make chloro DB's for use by CDS prediction program
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#
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mkdir myDB
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mkdir myDB/download
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cp GBKorEMBLEntries myDB/download
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[optional
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cp ORG_HOME/data/cds/chlorodb/parameters.sh myDB
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<edit> myDB/parameters.sh
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]
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go_chlorodb.sh myDB
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and... wait... (typical time : 5h for 500 Entries)
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then (after checking)
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mv ORG_HOME/data/cds/chlorodb ORG_HOME/data/cds/chlorodb.old
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mv myDB ORG_HOME/data/cds/chlorodb
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#
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# notes
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#
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this requires an installed R > 3.0.1
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with the following packages
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igraph # <- mandatory
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grid # <- the following are not needed
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gridExtra # by scripts, but just to
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vcd # produce graphics for models
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plotrix # by lib/plot.models.r
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you can check and install them by running :
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lib/install.rpackages.r
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