PhyloSkims/annotate
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

first batch

Browse Source 
Former-commit-id: 1eecb206a17c4aff21d1170b48db134ce3c4f14e
This commit is contained in:
Eric Coissac
2025-03-01 16:15:28 +01:00
parent 4e51d42b85
commit 2c012eec8e
596 changed files with 5247 additions and 77743 deletions
Download Patch File Download Diff File Expand all files Collapse all files

11
data/rrna/README
View File

@ -16,3 +16,14 @@ hmmbuild --dna -n RRNA_5S_RC --wpb plast_RRNA_5S_RC.hmm 5S.goodali.rc.fst
hmmbuild --dna -n RRNA_4.5S_RC --wpb plast_RRNA_4.5S_RC.hmm 4.5S.goodali.rc.fst
cat plast_RRNA_*.hmm > plast_RRNA.hmm
#
# Command for mitochondrion rRNA models
#
splitgbk.sh mitochondrion.1.genomic.gbff
pushd mitochondrion
rm $(grep -H "^CONTIG" * | awk -F ":" '{print $1}')
popd
buildRRNAModels_mito.sh $(pwd)/mitochondrion/*.gbk