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Former-commit-id: 1eecb206a17c4aff21d1170b48db134ce3c4f14e

detectors/normalize/tools/selectMetazoa.sh

@@ -0,0 +1,23 @@
+#!/bin/bash
+
+# -- CAUTION -- Works as long than the script 
+#               is not called through a symlink
+THIS_DIR="$(dirname ${BASH_SOURCE[0]})"
+source "${THIS_DIR}/../../../scripts/bash_init.sh"
+
+
+(                                          \
+	for f in $1/*.gbk* ; do                       \
+		if [[ "$f" =~ \.gz$ ]] ; then      \
+			GREP=zgrep;                    \
+	    else                               \
+			GREP=grep;                     \
+	    fi;                                \
+		${GREP} -H -A 1 '  ORGANISM' $f;   \
+    done                                   \
+) | \
+  grep -B 1 Metazoa | \
+  $AwkCmd '{print $1}' | \
+  grep '\.gbk' | \
+  sed -E 's/(^.*\.gbk(.gz)?).$/\1/' | \
+  uniq