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Former-commit-id: 1eecb206a17c4aff21d1170b48db134ce3c4f14e

detectors/rrna/tools/splitgbk.sh

@@ -0,0 +1,29 @@
+#!/bin/bash
+#
+#                           splitgbk.sh:
+#                           Split a gbk file in multiple files
+#                           each containing a single sequence
+#
+#========================================================================================
+
+# -- CAUTION -- Works as long than the script 
+#               is not called through a symlink
+THIS_DIR="$(dirname ${BASH_SOURCE[0]})"
+source "${THIS_DIR}/../../../scripts/bash_init.sh"
+
+inputfile=$1
+dest=${inputfile/.*/}
+
+mkdir -p $dest
+
+$AwkCmd -v dest="$dest" '/^LOCUS/ {
+            AC=$2;
+            destfile = sprintf("%s/%s.gbk", dest, AC);
+        }
+        { 
+            print $0 >> destfile
+        }
+        /^\/\// {
+            close(destfile);
+        }
+        ' $inputfile