Patch RPS12 detection

This commit is contained in:
Eric Coissac
2025-05-25 13:43:43 +02:00
parent 17908e0df2
commit 478a6bdca7

View File

@ -276,11 +276,7 @@ blastx \
# #
n=0 n=0
for f in *.res ; do for f in *.res ; do
loginfo "processing $f"
xxx=$(cat $f)
echo -e "\n==============\n$xxx\n==============\n" 1>&2
((n=n+1)) ((n=n+1))
mv $f $f.ori mv $f $f.ori
if [[ -z "$TEMP" ]] ; then if [[ -z "$TEMP" ]] ; then
@ -288,7 +284,6 @@ blastx \
else else
dest="$TEMP/$f" dest="$TEMP/$f"
fi fi
loginfo "Destination file $dest"
header=$(head -1 ${f/.rps12.res/.fasta}) header=$(head -1 ${f/.rps12.res/.fasta})
loginfo "Header: $header" loginfo "Header: $header"
L2=$(sed -E 's/^.*limit=([0-9]+);.*$/\1/' <<< $header) L2=$(sed -E 's/^.*limit=([0-9]+);.*$/\1/' <<< $header)