Patch RPS12 detection
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@ -276,11 +276,7 @@ blastx \
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#
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#
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n=0
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n=0
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for f in *.res ; do
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for f in *.res ; do
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loginfo "processing $f"
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xxx=$(cat $f)
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echo -e "\n==============\n$xxx\n==============\n" 1>&2
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((n=n+1))
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((n=n+1))
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mv $f $f.ori
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mv $f $f.ori
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if [[ -z "$TEMP" ]] ; then
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if [[ -z "$TEMP" ]] ; then
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@ -288,7 +284,6 @@ blastx \
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else
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else
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dest="$TEMP/$f"
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dest="$TEMP/$f"
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fi
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fi
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loginfo "Destination file $dest"
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header=$(head -1 ${f/.rps12.res/.fasta})
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header=$(head -1 ${f/.rps12.res/.fasta})
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loginfo "Header: $header"
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loginfo "Header: $header"
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L2=$(sed -E 's/^.*limit=([0-9]+);.*$/\1/' <<< $header)
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L2=$(sed -E 's/^.*limit=([0-9]+);.*$/\1/' <<< $header)
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