First version of the scripts for building the CAU tRNA database

Former-commit-id: 443a0446133850bb57211c27d2001241b03472bd
Former-commit-id: 8af464a0786f81dddf795f0cbda9ada9974808bf

data/trna/CAU_tRNA_DB.log

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+2015-10-10 18:52:35 [OA INFO   ] 63859 -- Selecting Viridiplantae genebank entries...
+2015-10-10 18:52:44 [OA INFO   ] 63859 --  -->      695 entries selected
+2015-10-10 18:52:44 [OA INFO   ] 63859 -- Done
+2015-10-10 18:52:44 [OA INFO   ] 63859 -- Extracting the CAU tRNA from the plants entries...
+2015-10-10 19:03:07 [OA INFO   ] 63859 -- Done
+2015-10-10 19:03:07 [OA INFO   ] 63859 -- Sorting the CAU tRNA...
+2015-10-10 19:03:07 [OA INFO   ] 63859 -- Extract and dereplicate trnI...
+2015-10-10 19:03:07 [OA INFO   ] 63859 -- Extract and dereplicate trnM...
+2015-10-10 19:03:07 [OA INFO   ] 63859 -- Extract and dereplicate trnfM...
+2015-10-10 19:03:07 [OA INFO   ] 63859 -- Done
+2015-10-10 19:03:07 [OA INFO   ] 63859 -- Cleaning the CAU tRNA...
+2015-10-10 19:03:07 [OA INFO   ] 63859 -- First pass...
+2015-10-10 19:03:09 [OA INFO   ] 63859 --  -->      420 trnCAU.good.ids sequences kept
+2015-10-10 19:03:09 [OA INFO   ] 63859 -- Second pass...
+2015-10-10 19:03:11 [OA INFO   ] 63859 --  -->      419 trnCAU.good.ids sequences kept
+2015-10-10 19:03:11 [OA INFO   ] 63859 -- Done
+2015-10-10 19:03:11 [OA INFO   ] 63859 -- Installing the CAU tRNA database...
+2015-10-10 19:03:11 [OA INFO   ] 63859 -- Done

data/trna/ncbi20150303.ndx.REMOVED.git-id

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data/trna/ncbi20150303.tdx.REMOVED.git-id

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