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small modifications for the luke cluster

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Former-commit-id: 55a83611220f824a0efdb1267816f98df984152e
Former-commit-id: e01bf6440c2981904f31807766e9e48aea8b18c1
This commit is contained in:
Eric Coissac
2015-11-09 15:27:32 +01:00
parent 8b27f23a8e
commit ae703c70d6
3 changed files with 4 additions and 3 deletions
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1
detectors/normalize/lib/lookforIR.lib.sh
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@ -25,6 +25,7 @@ function lookForIR {
{print substr($2,1,3),$8,$7,SAME}}' | \
sort -nk 2 > ${MATCHES}
loginfo "Done"
loginfo "Looking for long inverted repeats..."
repseek -c -p 0.001 -i ${QUERY} 2>> /dev/null > ${REPEATS}

4
detectors/normalize/lib/selectIR.py
View File

@ -32,7 +32,7 @@ for line in data:
for p in range(begin,end):
chr[p]+=direction
maxSSC = float(max(abs(n) for n in chloro['SSC']))
maxLSC = float(max(abs(n) for n in chloro['LSC']))
@ -132,4 +132,4 @@ sys.stdout.write("%s %s %s %s %d %d %d %d %6.5f\n" % (center,
#for p in range(chlorosize):
# sys.stdout.write("%d %d %d\n" % (p,chloro['SSC'][p],chloro['LSC'][p]))

2
scripts/bash_init.sh
View File

@ -19,7 +19,7 @@ function getAbsolutePath {
# Manage temp directory
function pushTmpDir {
TMP_DIR=$(mktemp -d -t "$1_proc_$$_")
TMP_DIR=$(mktemp -d -t "$1_proc_$$_XXXXXX")
pushd $TMP_DIR >& /dev/null
TMP_DIR_STACK="$TMP_DIR $TMP_DIR_STACK"
logdebug "Pushing temp directory $TMP_DIR"