small modifications for the luke cluster · ae703c70d6 - annotate - Gitea: Git with a cup of tea

PhyloSkims/annotate

small modifications for the luke cluster

Former-commit-id: 55a83611220f824a0efdb1267816f98df984152e
Former-commit-id: e01bf6440c2981904f31807766e9e48aea8b18c1

This commit is contained in:

Eric Coissac

2015-11-09 15:27:32 +01:00

parent 8b27f23a8e

commit ae703c70d6

3 changed files with 4 additions and 3 deletions

									
										1

detectors/normalize/lib/lookforIR.lib.sh
									
												View File
												
				@ -25,6 +25,7 @@ function lookForIR {

							 			{print substr($2,1,3),$8,$7,SAME}}' | \

						  sort -nk 2 > ${MATCHES}

					loginfo "Done"

					loginfo "Looking for long inverted repeats..."

						repseek -c -p 0.001 -i ${QUERY} 2>> /dev/null > ${REPEATS}