831669433e
Switch to a swissprot based reference database for CDS annotation
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2022-02-16 22:50:17 +01:00
59fcad1c42
Adds detection of RPS12 and managment of locus tags
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2022-02-14 14:21:50 +01:00
e4627ced6e
Switch the go_cds script from tcsh to bash
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2021-11-04 13:36:28 +01:00
2c1d15c227
Adds the detection of the RPS12 gene (Gene with trans-splicing)
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2021-11-03 13:19:01 +01:00
d4da1d01fd
A new set of protein cleaned for the CDS detector prepared using the
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clusterizecore.sh script from the detectors/cds/lib folder.
The CDS detector is now modified to use the clean.fst files.
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2016-10-05 09:31:24 -03:00
8113b80d47
Add annotation of nuclear rDNA cistron
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2016-05-02 10:56:40 +02:00
644f154050
Add a fasta1line function reformating the sequence with a line for the
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header and a single line for the sequence
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2016-04-25 11:15:14 +02:00
756d541a82
Try to solve to "Warning: ridiculously long PATH truncated" message
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generated by the csh shell.
Perhaps will we have to avoid this shell ;-)
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2016-04-13 13:04:28 +02:00
405631f527
cds go_test bug fixed
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2015-11-13 22:37:22 +01:00
42707c281c
added test for chlorodb
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2015-11-13 18:53:47 +01:00
e4d6a8484d
cds/tools/chlorodb added
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2015-11-13 17:41:18 +01:00
dd9b23bc77
Merge branch 'master' of git.metabarcoding.org:org-asm/org-annotate
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2015-11-10 22:15:29 +01:00
9108ce75f1
fixed too many partial CDS bug
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2015-11-10 22:15:01 +01:00
ae703c70d6
small modifications for the luke cluster
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2015-11-09 15:27:32 +01:00
c3c2be254f
go_pass1 moved to bin
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2015-11-09 00:58:50 +01:00
2261fa1c48
Switch from awk to gawk
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2015-11-08 19:33:00 +01:00
efb9949075
CDS detector added
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2015-11-08 14:28:57 +01:00
8dab2d56b2
CDS detector added
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2015-11-08 14:28:05 +01:00
01c5880ace
First version including the rRNA detector
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2015-10-12 07:15:08 -03:00
c32f7cdde6
First version of the tRNA detector and of the global organnot.sh script
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2015-10-11 10:39:59 -03:00
6015339839
First version of the scripts for building the CAU tRNA database
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2015-10-10 19:12:02 -03:00
9973d1cf71
A first functionnal version of the normalize_plastid.sh script.
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2015-10-08 15:38:46 -03:00
37e1ecc9fd
Add scripts to generate reference DBs for LSC and SSC
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2015-10-07 11:32:17 -03:00
d298385685
First commit - second part
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2015-10-02 21:13:16 +02:00
