Commit Graph

29 Commits

Author SHA1 Message Date
136c9ee7f6 Correct .gitignore files
Former-commit-id: 9d27bea3d56cf969ba7fee1f26ebcea1581ea45a
Former-commit-id: b3f0b1e648dac169dc8387ad6e80137cadf3f000
2018-05-11 16:35:28 +02:00
812fdfa06f Switch to version 2.4.0 of exonerate
Former-commit-id: c3d1cd54f603eb46ee89a6534ab1f3569182c762
Former-commit-id: e501561bb6453ef97c7e3a00bf6759a779120438
2018-05-11 16:19:30 +02:00
c691818059 Changes in .gitignore
Former-commit-id: 7e9fcd4ed6487e52562b274d87345e0e46f1458d
Former-commit-id: bf7a58dcf96db9f8c132977aa7d3f6af97cce0f5
2018-04-05 18:15:40 +02:00
9070b54732 Switch to clustal-omega version 1.2.4
Former-commit-id: f2eba5fb6556643d8926f3be4a67efcf5c55c9dc
Former-commit-id: 5303009434cf90955cd0d58246fe549fa3b487b4
2018-04-05 18:02:01 +02:00
9bcfa914fe Switch to version 1.2.38 of aragorn
Former-commit-id: 8fdde2e7586aa22e401bc760f8c67c24eded9d78
Former-commit-id: 7e79dc7df97373f5527b6a2d9526cecfcb2b7376
2018-04-05 18:01:01 +02:00
c37c175fd8 Switch to clustalo version 1.2.4
Former-commit-id: 0e15ea203e7af3c7bf0504991cd99fef713bc133
Former-commit-id: 46d3bdd981e33e9f9d18e1c8946cda1f778dbd97
2018-03-30 13:47:59 +02:00
1d0600bd31 Switch Aragorn to version 1.2.38
Former-commit-id: 46bb36694fb02a83926b78d76aa367ffffd55706
Former-commit-id: 916ab5d14b599d8bc4fd3d47958165a5512a9849
2018-03-30 13:27:13 +02:00
8113b80d47 Add annotation of nuclear rDNA cistron
Former-commit-id: ee54019ddddbea4d17956622968f6ce673b609e1
Former-commit-id: 5e5381cf59409ca3dc01098b0e3f330efe0a6a32
2016-05-02 10:56:40 +02:00
7d04371387 Add ITSx to th src
Former-commit-id: 7f75da850aa538ea79e633d2a600e3c42558cdba
Former-commit-id: 96200ce9daf7a9fd51d532cc2403611eaf8026f1
2016-04-28 10:08:10 +02:00
69434c5b86 Add the latest tcsh able to deal with large PATH (at least 4096)
Former-commit-id: 32011d9b239e2c5ed93646a8173b285f377693a3
Former-commit-id: 6e804387bfacfc4e9242ef3f7014642044f3aa2c
2016-04-13 16:21:50 +02:00
b2cc474077 Add the cd-hit program to the binaries
Former-commit-id: 0ecdb8d90e9e78940ec9b109c3a0b484bcacf14d
Former-commit-id: 4c3551f7bca6c203fb7ffbba6c2e37d15d763487
2016-01-27 13:09:43 +01:00
647695d2a2 Patch a compilation bug for getopt
Former-commit-id: 0ea287f1ca4ed7808577b3e0a12c568da10f6ee8
Former-commit-id: 361c4e3e00ed587a7d7ca684fa92fafefd3cda83
2016-01-05 17:19:37 +01:00
99865ad568 Add the standard getopt external command allowing to deal with short and
long options in scripts

Former-commit-id: 128f06564f712724c66304c46b32057a2f0943c3
Former-commit-id: 98246ddfe8807c4269408452b1bd71accd993a27
2015-12-18 11:47:56 +01:00
d09a1fc40a Ignore the build directory
Former-commit-id: 476e40707e6c884c2abfaecabbefe2691150eaa8
Former-commit-id: 2850ad1d963c6167c583c355936214ea2af6f963
2015-11-29 19:03:54 +01:00
a6ee2f0781 corrected bug in ncbiblast src/build-system/Makefile.in.top
Former-commit-id: edd07fd725f2ff1872d64bde8026ff41a68733c9
Former-commit-id: a8129cd2857df2414db1754da72ec8ad17465bd5
2015-11-14 03:21:51 +01:00
7cffc9b412 corrected compilation bug muscle on linux
Former-commit-id: 87269138a1b31f83bebc4a3f53f32d6b4c5b8289
Former-commit-id: 943c2fba5e4d2c1bfa4c785b930b97835c6669e1
2015-11-14 01:32:11 +01:00
3acb2b4ea0 squared src - added missing portclean targets
Former-commit-id: d233d03829d67d33161a1c7ea8f50e09d0a758f7
Former-commit-id: 24a9b61d46451c7dcf6ed5bd222cef3cc3cfc218
2015-11-14 00:39:04 +01:00
ac6dfb38e0 squared several distro in src - clean target added
Former-commit-id: ebb0e3167e76f9e9dbacde38c695e1f4533c24d4
Former-commit-id: c83d3ed57dc860d1e5a6c41481f850b41f04f0fc
2015-11-14 00:25:39 +01:00
085a5ff2a7 squared muscle
Former-commit-id: 54638fc7623ec0485109b0b5879144f8f2514213
Former-commit-id: 23f43cd31169d95df12ae1c207d9fd1c924d26b1
2015-11-14 00:11:27 +01:00
d52ebf0359 squared hmmer distro
Former-commit-id: 2d4971feca9edf04700af6f7765764123997f5c4
Former-commit-id: 97755cfa4930ae468817c1d11393652264df4c2a
2015-11-13 23:30:03 +01:00
80d7027d70 clean gawk distro
Former-commit-id: 5b6234f3446036d831aa131ec7617798a39b86b1
Former-commit-id: f8271890bc649168280f5d634c721e4883976da1
2015-11-13 23:00:27 +01:00
232f601c66 Add gawk dans les binaries which not standard on mac at least
Former-commit-id: fcdf44b531930549f07d8bddcb5976b4bc654e8b
Former-commit-id: 7746dd86930eeabf43f418818ca2d41b2bd79705
2015-11-08 16:59:03 +01:00
8d78a72687 remove dev_config
Former-commit-id: fa67c98a5c571cde4a6126d709b18ccc44b8c643
Former-commit-id: 97bb191c49ed444ee525f40b296088a9c013ef12
2015-11-08 15:00:11 +01:00
efb9949075 CDS detector added
Former-commit-id: a72f30f90d22cc3c7ff6059e0254e47911bb5af1
Former-commit-id: db0264bdbe5136b6e6dc44e4788175a257439643
2015-11-08 14:28:57 +01:00
8dab2d56b2 CDS detector added
Former-commit-id: 93fac7a70052d06c2a12bf8af59820c653edd31b
Former-commit-id: 0869fdad0f550941a0f78f1e4c57f4fcdb3f6076
2015-11-08 14:28:05 +01:00
fb1158bcd4 Add a forgeted Makefile
Former-commit-id: f633e09b64ca5f887b350cd06fcbadd34cd2caa8
Former-commit-id: 6addadf3247686c43b130e1202a949afca74be8b
2015-10-06 19:14:53 -03:00
4e688d0a89 add gitignore files
Former-commit-id: 955ee956322e30388eac7e5322113e0783513e45
Former-commit-id: 212c98038aeb0c99043ef70048bf205766b75610
2015-10-05 23:28:09 -03:00
6f0ba35953 Patch compilation of binaries
Former-commit-id: 688670c339643a282bdeabafafff3b451be83cb6
Former-commit-id: 60d3e42d2af73515fea50d9c97dc4eacda9c8abb
2015-10-05 22:25:17 -03:00
d298385685 First commit - second part
Former-commit-id: 202296404e6a70f8ae96db99faffb456104c57e9
Former-commit-id: 118417735d2055683607df9809c9b721cc1b1bab
2015-10-02 21:13:16 +02:00