4b71fe8c4c
Changes to be committed:
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modified: .gitignore
new file: data/cds/sp_chlorodb/parameters.sh
deleted: data/ir/LSC_RefDB.fasta
deleted: data/ir/SSC_RefDB.fasta
modified: detectors/cds/bin/go_cds.sh
modified: detectors/normalize/lib/lookforIR.lib.sh
modified: detectors/normalize/lib/selectIR.py
modified: organnot/Dockerfile
new file: organnot/README.md
new file: organnot/dorgannot
deleted: ports/.DS_Store
deleted: src/ncbiblast/binaries/.gitignore
deleted: src/prokov/lxpack/tests/S.fasta
deleted: src/prokov/lxpack/tests/St.fasta
deleted: src/prokov/lxpack/tests/Stt.fasta
deleted: src/prokov/lxpack/tests/aS.fasta
deleted: src/prokov/lxpack/tests/aSt.fasta
deleted: src/prokov/lxpack/tests/aStt.fasta
deleted: src/prokov/lxpack/tests/aaS.fasta
deleted: src/prokov/lxpack/tests/aaSt.fasta
deleted: src/prokov/lxpack/tests/aaStt.fasta
new file: src/repseek/repseek-2014.09.tgz
2025-03-05 21:56:39 +01:00
4e51d42b85
Patch for algae chloroplast. Require to come back on this patch
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Former-commit-id: 2ed9c6423fc92949cb3ef3f0293fef9fe2d581b6
Former-commit-id: cb3be1bfa89dd67c05dba49d2dd44f03016fe7d9
2023-07-13 00:38:24 +02:00
7866457712
allows to change easiestly parameters
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Former-commit-id: f1f4fa2d1bc86494aab643090e6b06724b2923e3
2023-04-29 07:06:07 +02:00
d4da1d01fd
A new set of protein cleaned for the CDS detector prepared using the
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clusterizecore.sh script from the detectors/cds/lib folder.
The CDS detector is now modified to use the clean.fst files.
Former-commit-id: e30a53b5b6b658388af4b2640b30e6765c729894
Former-commit-id: 3015ad50d25248fb117ab00e816b00fde1f9ba1d
2016-10-05 09:31:24 -03:00
195739b5f8
Patch bug in the inverted repeats annotation
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Realize the annotation on the normalized chromosome
Former-commit-id: 73e4e016d7bfe23fc92e4071efb0a4629eb8e21f
Former-commit-id: d44249c0d078d475ca80386bb428fb660289b0dd
2015-11-09 17:03:22 +01:00
ae703c70d6
small modifications for the luke cluster
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Former-commit-id: e01bf6440c2981904f31807766e9e48aea8b18c1
2015-11-09 15:27:32 +01:00
c402923d0f
First version of if inverted repeat annotation tools
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Former-commit-id: 74a7f07d3fb26f6ce12808b8fe2dc7f176181285
2015-10-08 17:38:01 -03:00
