|
|
2c012eec8e
|
first batch
Former-commit-id: 1eecb206a17c4aff21d1170b48db134ce3c4f14e
|
2025-03-01 16:15:28 +01:00 |
|
|
|
702442245e
|
Re-add local version of hmmer for being able to process large sequences
Former-commit-id: a2a87733f9bc4b09be7a3f055691d4c6071187a4
Former-commit-id: 2fa34ba03a91702785b63bcd03c6be79c80c9f54
|
2023-06-12 17:43:11 +02:00 |
|
|
|
258db783c3
|
copy every exonate binaries and not only exonarate
Former-commit-id: b4d34f1dcf6822e17b74b9c4172ccde7f063bf8a
Former-commit-id: dc038947c68d2c1dcf2a57302d90864fab9854d9
|
2023-06-12 17:09:14 +02:00 |
|
|
|
bee9fd0a0d
|
Update Makefile to remove compilation of some software programs easily installable using package managers
Former-commit-id: 4d9f33c71f5e85c4cdea0303c20efb266685015f
Former-commit-id: d2e8c10c31065889ae35715e69869c42a38e8d41
|
2023-06-12 09:18:45 +02:00 |
|
|
|
2ff37343b6
|
Switch to the system parallel
Former-commit-id: 6e4c5e56b2fe37519d63594e139b9d2f53b92fc6
Former-commit-id: d5a3fb9919e6b7dcfd0fba7995b98c5936048471
|
2023-05-15 15:36:52 +02:00 |
|
|
|
06729511ad
|
remove install from sources of gawk and tcsh
Former-commit-id: ac9b1a4fbc4a4ec5b004235e875e4bd2283c326e
Former-commit-id: 81d9d1146bd1c58fa0002b0a240c7d57bfc8e7a6
|
2023-05-15 09:46:55 +02:00 |
|
|
|
4680b4f4d3
|
rename exonarate binary archive
Former-commit-id: 3ea459c95cb5c2fc8f174d79bff7de25e54acc9e
Former-commit-id: 770f410484952ca926d77082a73e166534d28fc3
|
2023-05-15 08:52:47 +02:00 |
|
|
|
857fe67bf2
|
Add a precompiled version of exonerate
Former-commit-id: 41f612c0f642a70a4af11f41c7e41e07f8758b14
Former-commit-id: 6becf83274fa975a004318ed7d5b44fd5a290da8
|
2023-05-15 08:35:28 +02:00 |
|
|
|
18453afeae
|
Add dependency to GNU parallel
Former-commit-id: 78cb887499f05a9b5ac936e40d228a202e3cc41c
Former-commit-id: 12f8fc27b6c99a17af557cc2bceff0cdacc4cb16
|
2022-02-17 18:39:51 +01:00 |
|
|
|
47800462da
|
Add .DS_Store to the .gitignore files
Former-commit-id: b92f41967df69ae95f15cbf3a8f6475dd9a91554
Former-commit-id: 810fb2ce5409938dfa803f66771763dedcdc33c0
|
2018-05-11 16:52:21 +02:00 |
|
|
|
136c9ee7f6
|
Correct .gitignore files
Former-commit-id: 9d27bea3d56cf969ba7fee1f26ebcea1581ea45a
Former-commit-id: b3f0b1e648dac169dc8387ad6e80137cadf3f000
|
2018-05-11 16:35:28 +02:00 |
|
|
|
812fdfa06f
|
Switch to version 2.4.0 of exonerate
Former-commit-id: c3d1cd54f603eb46ee89a6534ab1f3569182c762
Former-commit-id: e501561bb6453ef97c7e3a00bf6759a779120438
|
2018-05-11 16:19:30 +02:00 |
|
|
|
c691818059
|
Changes in .gitignore
Former-commit-id: 7e9fcd4ed6487e52562b274d87345e0e46f1458d
Former-commit-id: bf7a58dcf96db9f8c132977aa7d3f6af97cce0f5
|
2018-04-05 18:15:40 +02:00 |
|
|
|
9070b54732
|
Switch to clustal-omega version 1.2.4
Former-commit-id: f2eba5fb6556643d8926f3be4a67efcf5c55c9dc
Former-commit-id: 5303009434cf90955cd0d58246fe549fa3b487b4
|
2018-04-05 18:02:01 +02:00 |
|
|
|
9bcfa914fe
|
Switch to version 1.2.38 of aragorn
Former-commit-id: 8fdde2e7586aa22e401bc760f8c67c24eded9d78
Former-commit-id: 7e79dc7df97373f5527b6a2d9526cecfcb2b7376
|
2018-04-05 18:01:01 +02:00 |
|
|
|
c37c175fd8
|
Switch to clustalo version 1.2.4
Former-commit-id: 0e15ea203e7af3c7bf0504991cd99fef713bc133
Former-commit-id: 46d3bdd981e33e9f9d18e1c8946cda1f778dbd97
|
2018-03-30 13:47:59 +02:00 |
|
|
|
1d0600bd31
|
Switch Aragorn to version 1.2.38
Former-commit-id: 46bb36694fb02a83926b78d76aa367ffffd55706
Former-commit-id: 916ab5d14b599d8bc4fd3d47958165a5512a9849
|
2018-03-30 13:27:13 +02:00 |
|
|
|
8113b80d47
|
Add annotation of nuclear rDNA cistron
Former-commit-id: ee54019ddddbea4d17956622968f6ce673b609e1
Former-commit-id: 5e5381cf59409ca3dc01098b0e3f330efe0a6a32
|
2016-05-02 10:56:40 +02:00 |
|
|
|
7d04371387
|
Add ITSx to th src
Former-commit-id: 7f75da850aa538ea79e633d2a600e3c42558cdba
Former-commit-id: 96200ce9daf7a9fd51d532cc2403611eaf8026f1
|
2016-04-28 10:08:10 +02:00 |
|
|
|
69434c5b86
|
Add the latest tcsh able to deal with large PATH (at least 4096)
Former-commit-id: 32011d9b239e2c5ed93646a8173b285f377693a3
Former-commit-id: 6e804387bfacfc4e9242ef3f7014642044f3aa2c
|
2016-04-13 16:21:50 +02:00 |
|
|
|
b2cc474077
|
Add the cd-hit program to the binaries
Former-commit-id: 0ecdb8d90e9e78940ec9b109c3a0b484bcacf14d
Former-commit-id: 4c3551f7bca6c203fb7ffbba6c2e37d15d763487
|
2016-01-27 13:09:43 +01:00 |
|
|
|
647695d2a2
|
Patch a compilation bug for getopt
Former-commit-id: 0ea287f1ca4ed7808577b3e0a12c568da10f6ee8
Former-commit-id: 361c4e3e00ed587a7d7ca684fa92fafefd3cda83
|
2016-01-05 17:19:37 +01:00 |
|
|
|
99865ad568
|
Add the standard getopt external command allowing to deal with short and
long options in scripts
Former-commit-id: 128f06564f712724c66304c46b32057a2f0943c3
Former-commit-id: 98246ddfe8807c4269408452b1bd71accd993a27
|
2015-12-18 11:47:56 +01:00 |
|
|
|
d09a1fc40a
|
Ignore the build directory
Former-commit-id: 476e40707e6c884c2abfaecabbefe2691150eaa8
Former-commit-id: 2850ad1d963c6167c583c355936214ea2af6f963
|
2015-11-29 19:03:54 +01:00 |
|
|
|
a6ee2f0781
|
corrected bug in ncbiblast src/build-system/Makefile.in.top
Former-commit-id: edd07fd725f2ff1872d64bde8026ff41a68733c9
Former-commit-id: a8129cd2857df2414db1754da72ec8ad17465bd5
|
2015-11-14 03:21:51 +01:00 |
|
|
|
7cffc9b412
|
corrected compilation bug muscle on linux
Former-commit-id: 87269138a1b31f83bebc4a3f53f32d6b4c5b8289
Former-commit-id: 943c2fba5e4d2c1bfa4c785b930b97835c6669e1
|
2015-11-14 01:32:11 +01:00 |
|
|
|
3acb2b4ea0
|
squared src - added missing portclean targets
Former-commit-id: d233d03829d67d33161a1c7ea8f50e09d0a758f7
Former-commit-id: 24a9b61d46451c7dcf6ed5bd222cef3cc3cfc218
|
2015-11-14 00:39:04 +01:00 |
|
|
|
ac6dfb38e0
|
squared several distro in src - clean target added
Former-commit-id: ebb0e3167e76f9e9dbacde38c695e1f4533c24d4
Former-commit-id: c83d3ed57dc860d1e5a6c41481f850b41f04f0fc
|
2015-11-14 00:25:39 +01:00 |
|
|
|
085a5ff2a7
|
squared muscle
Former-commit-id: 54638fc7623ec0485109b0b5879144f8f2514213
Former-commit-id: 23f43cd31169d95df12ae1c207d9fd1c924d26b1
|
2015-11-14 00:11:27 +01:00 |
|
|
|
d52ebf0359
|
squared hmmer distro
Former-commit-id: 2d4971feca9edf04700af6f7765764123997f5c4
Former-commit-id: 97755cfa4930ae468817c1d11393652264df4c2a
|
2015-11-13 23:30:03 +01:00 |
|
|
|
80d7027d70
|
clean gawk distro
Former-commit-id: 5b6234f3446036d831aa131ec7617798a39b86b1
Former-commit-id: f8271890bc649168280f5d634c721e4883976da1
|
2015-11-13 23:00:27 +01:00 |
|
|
|
232f601c66
|
Add gawk dans les binaries which not standard on mac at least
Former-commit-id: fcdf44b531930549f07d8bddcb5976b4bc654e8b
Former-commit-id: 7746dd86930eeabf43f418818ca2d41b2bd79705
|
2015-11-08 16:59:03 +01:00 |
|
|
|
8d78a72687
|
remove dev_config
Former-commit-id: fa67c98a5c571cde4a6126d709b18ccc44b8c643
Former-commit-id: 97bb191c49ed444ee525f40b296088a9c013ef12
|
2015-11-08 15:00:11 +01:00 |
|
|
|
efb9949075
|
CDS detector added
Former-commit-id: a72f30f90d22cc3c7ff6059e0254e47911bb5af1
Former-commit-id: db0264bdbe5136b6e6dc44e4788175a257439643
|
2015-11-08 14:28:57 +01:00 |
|
|
|
8dab2d56b2
|
CDS detector added
Former-commit-id: 93fac7a70052d06c2a12bf8af59820c653edd31b
Former-commit-id: 0869fdad0f550941a0f78f1e4c57f4fcdb3f6076
|
2015-11-08 14:28:05 +01:00 |
|
|
|
fb1158bcd4
|
Add a forgeted Makefile
Former-commit-id: f633e09b64ca5f887b350cd06fcbadd34cd2caa8
Former-commit-id: 6addadf3247686c43b130e1202a949afca74be8b
|
2015-10-06 19:14:53 -03:00 |
|
|
|
4e688d0a89
|
add gitignore files
Former-commit-id: 955ee956322e30388eac7e5322113e0783513e45
Former-commit-id: 212c98038aeb0c99043ef70048bf205766b75610
|
2015-10-05 23:28:09 -03:00 |
|
|
|
6f0ba35953
|
Patch compilation of binaries
Former-commit-id: 688670c339643a282bdeabafafff3b451be83cb6
Former-commit-id: 60d3e42d2af73515fea50d9c97dc4eacda9c8abb
|
2015-10-05 22:25:17 -03:00 |
|
|
|
d298385685
|
First commit - second part
Former-commit-id: 202296404e6a70f8ae96db99faffb456104c57e9
Former-commit-id: 118417735d2055683607df9809c9b721cc1b1bab
|
2015-10-02 21:13:16 +02:00 |
|
