Commit Graph

13 Commits

Author SHA1 Message Date
ae703c70d6 small modifications for the luke cluster
Former-commit-id: 55a83611220f824a0efdb1267816f98df984152e
Former-commit-id: e01bf6440c2981904f31807766e9e48aea8b18c1
2015-11-09 15:27:32 +01:00
cf99ca56a4 Patches for the cluster luke
Former-commit-id: 54cfd925a4cb13d389bd3086164b99bd246319e7
Former-commit-id: d865056147c56bf0c6220e29d7f40e26f140a4ba
2015-11-09 13:11:54 +01:00
d77a0dfe67 added cds/tools/compare
Former-commit-id: 07fb256bf17db3f0ffc1730b0383f8255fbb9129
Former-commit-id: fd6a1fe72a39c5633c2f9fb6de09af979c2a48f3
2015-11-09 01:15:14 +01:00
2261fa1c48 Switch from awk to gawk
Former-commit-id: 70b104ab89d4c90a35925dbbcacdafaf6c1f2836
Former-commit-id: bf29abf66345cbc0ca81461064dcca63dfd4c15c
2015-11-08 19:33:00 +01:00
efb9949075 CDS detector added
Former-commit-id: a72f30f90d22cc3c7ff6059e0254e47911bb5af1
Former-commit-id: db0264bdbe5136b6e6dc44e4788175a257439643
2015-11-08 14:28:57 +01:00
8dab2d56b2 CDS detector added
Former-commit-id: 93fac7a70052d06c2a12bf8af59820c653edd31b
Former-commit-id: 0869fdad0f550941a0f78f1e4c57f4fcdb3f6076
2015-11-08 14:28:05 +01:00
c32f7cdde6 First version of the tRNA detector and of the global organnot.sh script
Former-commit-id: f2a75cf99b24875c90c426c2afb22a75b972bf60
Former-commit-id: 65e3dfb35df06ca69bb29b690c9a40e8940ac6bf
2015-10-11 10:39:59 -03:00
c402923d0f First version of if inverted repeat annotation tools
Former-commit-id: 9d13deae459b086f11ba4f0f82aac899b4ff0fd9
Former-commit-id: 74a7f07d3fb26f6ce12808b8fe2dc7f176181285
2015-10-08 17:38:01 -03:00
f901b87ccd rename the main normalization script in go_normalize.sh
Former-commit-id: e9488f88279a644134c24205c8b0a25459f55403
Former-commit-id: 1e661d834bb83a09777ab5a19dad21f2c795baa2
2015-10-08 15:44:08 -03:00
9973d1cf71 A first functionnal version of the normalize_plastid.sh script.
Former-commit-id: 78c4a4d8497e6dc7185a6e5726ffc643d9ea914d
Former-commit-id: e6945818dbdbabd9cd060edb9d2578ea26671209
2015-10-08 15:38:46 -03:00
b75035064c Patch building of the Single copy reference DB to make a single blast
database for Large and Small Single copy


Former-commit-id: 9bad3443085b2b6b066c7f33f3eaf2e49b5e8992
Former-commit-id: 15ce54a189d9def4b824c149f0ba5ba036794567
2015-10-07 12:29:48 -03:00
37e1ecc9fd Add scripts to generate reference DBs for LSC and SSC
Former-commit-id: 77fd69c9687bfc7cfd3305299c7c81d2a9eddada
Former-commit-id: 4d09933673c30d6a9b2b9cc985b33ef23d7a99f4
2015-10-07 11:32:17 -03:00
d298385685 First commit - second part
Former-commit-id: 202296404e6a70f8ae96db99faffb456104c57e9
Former-commit-id: 118417735d2055683607df9809c9b721cc1b1bab
2015-10-02 21:13:16 +02:00