f3a045f2ac
debug intron location, update the anticondon qualifier structure to fit new model
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Former-commit-id: ea266ab1602753cc926822f34db668049ff193c4
2023-04-29 07:09:13 +02:00
59fcad1c42
Adds detection of RPS12 and managment of locus tags
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Former-commit-id: 369361ffa58e65b19ab1005bdf7960924f24ca08
2022-02-14 14:21:50 +01:00
616d5d084b
change tRNA and CDS annotations
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Former-commit-id: 18663d59e90e6d35b029d9087b66723487b8db1d
2021-11-05 09:29:57 +01:00
fde0208b21
Small indentation change
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Former-commit-id: cf9e29634ab1fb04ebbecd69025e433800262519
2021-11-03 13:20:21 +01:00
0a5a65ab26
Change the notation algorithm to take advantage of the new CAU tRNA
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reference library
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Former-commit-id: 7ee31aaed2aca437b689fc7930095279fce0051b
2018-04-05 17:59:12 +02:00
cf54e7dcb1
Close #15 . Actually the bug in intron location was related to a
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misinterpretation of the aragorn output format. Now tRNA, and intron
location are coherent with most of the locations extracted from genbank
file with one or 2 base pairs of difference.
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Former-commit-id: f8a0590342aec2db1fe5deb4475b8a9380891a48
2015-12-18 08:39:04 +01:00
89c4f17fc4
Patch a bug on the generation of the location of tRNA for gene on
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reverse complement strand with an intron.
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Former-commit-id: 722dc77682ef3da8a746879c52072c46adb9de71
2015-11-28 16:11:14 +01:00
2261fa1c48
Switch from awk to gawk
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Former-commit-id: bf29abf66345cbc0ca81461064dcca63dfd4c15c
2015-11-08 19:33:00 +01:00
c32f7cdde6
First version of the tRNA detector and of the global organnot.sh script
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2015-10-11 10:39:59 -03:00
