Eric Coissac
b75035064c
database for Large and Small Single copy Former-commit-id: 9bad3443085b2b6b066c7f33f3eaf2e49b5e8992 Former-commit-id: 15ce54a189d9def4b824c149f0ba5ba036794567
66 lines
4.1 KiB
Plaintext
66 lines
4.1 KiB
Plaintext
2015-10-07 12:22:15 [OA INFO ] 90184 -- Selecting Viridiplantae genebank entries...
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2015-10-07 12:22:24 [OA INFO ] 90184 -- --> 695 entries selected
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2015-10-07 12:22:24 [OA INFO ] 90184 -- Done
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2015-10-07 12:22:24 [OA INFO ] 90184 -- Extracting Long Single Copies (LSC)...
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2015-10-07 12:23:17 [OA INFO ] 90184 -- --> 64 retreived sequences
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2015-10-07 12:23:17 [OA INFO ] 90184 -- Done
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2015-10-07 12:23:17 [OA INFO ] 90184 -- Building LSC coorientation graph...
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2015-10-07 12:23:17 [OA INFO ] 90306 -- Build temporary blast DB...
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2015-10-07 12:23:18 [OA INFO ] 90306 -- Done
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2015-10-07 12:23:18 [OA INFO ] 90306 -- Running Blast...
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2015-10-07 12:24:29 [OA INFO ] 90306 -- Done
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2015-10-07 12:24:29 [OA INFO ] 90184 -- --> 6 connected componants
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2015-10-07 12:24:29 [OA INFO ] 90184 -- Done
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2015-10-07 12:24:29 [OA INFO ] 90184 -- Indexing LCS...
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2015-10-07 12:24:30 [OA INFO ] 90184 -- Done
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2015-10-07 12:24:30 [OA INFO ] 90184 -- Extracting main connected components for LCS...
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2015-10-07 12:24:30 [OA INFO ] 90184 -- --> 40 sequences
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2015-10-07 12:24:30 [OA INFO ] 90184 -- Done
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2015-10-07 12:24:30 [OA INFO ] 90184 -- Extracting second connected components for LCS...
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2015-10-07 12:24:30 [OA INFO ] 90184 -- --> 5 sequences
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2015-10-07 12:24:30 [OA INFO ] 90184 -- Done
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2015-10-07 12:24:30 [OA INFO ] 90184 -- merging both connected components for LCS...
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2015-10-07 12:24:30 [OA INFO ] 90184 -- --> 45 sequences in total
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2015-10-07 12:24:30 [OA INFO ] 90184 -- Done
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2015-10-07 12:24:30 [OA INFO ] 90184 -- Checking LCS homogeneity...
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2015-10-07 12:24:30 [OA INFO ] 90439 -- Build temporary blast DB...
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2015-10-07 12:24:30 [OA INFO ] 90439 -- Done
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2015-10-07 12:24:30 [OA INFO ] 90439 -- Running Blast...
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2015-10-07 12:25:35 [OA INFO ] 90439 -- Done
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2015-10-07 12:25:35 [OA INFO ] 90184 -- --> 1 connected componants
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2015-10-07 12:25:35 [OA INFO ] 90184 -- Done
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2015-10-07 12:25:35 [OA INFO ] 90184 -- Installing LCS reference databases...
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2015-10-07 12:25:35 [OA INFO ] 90184 -- Done
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2015-10-07 12:25:35 [OA INFO ] 90184 -- Extracting Short Single Copies (SSC)...
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2015-10-07 12:26:28 [OA INFO ] 90184 -- --> 76 retreived sequences
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2015-10-07 12:26:28 [OA INFO ] 90184 -- Done
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2015-10-07 12:26:28 [OA INFO ] 90184 -- Building SSC coorientation graph...
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2015-10-07 12:26:28 [OA INFO ] 90517 -- Build temporary blast DB...
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2015-10-07 12:26:28 [OA INFO ] 90517 -- Done
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2015-10-07 12:26:28 [OA INFO ] 90517 -- Running Blast...
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2015-10-07 12:26:49 [OA INFO ] 90517 -- Done
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2015-10-07 12:26:49 [OA INFO ] 90184 -- --> 1 connected componants
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2015-10-07 12:26:49 [OA INFO ] 90184 -- Done
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2015-10-07 12:26:49 [OA INFO ] 90184 -- Indexing SSC...
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2015-10-07 12:26:49 [OA INFO ] 90184 -- Done
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2015-10-07 12:26:49 [OA INFO ] 90184 -- Extracting main connected components for SSC...
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2015-10-07 12:26:49 [OA INFO ] 90184 -- --> 72 sequences
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2015-10-07 12:26:49 [OA INFO ] 90184 -- Done
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2015-10-07 12:26:49 [OA INFO ] 90184 -- Extracting second connected components for SSC...
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2015-10-07 12:26:49 [OA INFO ] 90184 -- --> 0 sequences
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2015-10-07 12:26:49 [OA INFO ] 90184 -- Done
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2015-10-07 12:26:49 [OA INFO ] 90184 -- merging both connected components for SSC...
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2015-10-07 12:26:49 [OA INFO ] 90184 -- --> 72 sequences in total
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2015-10-07 12:26:49 [OA INFO ] 90184 -- Done
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2015-10-07 12:26:49 [OA INFO ] 90184 -- Checking SSC homogeneity...
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2015-10-07 12:26:49 [OA INFO ] 90675 -- Build temporary blast DB...
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2015-10-07 12:26:49 [OA INFO ] 90675 -- Done
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2015-10-07 12:26:49 [OA INFO ] 90675 -- Running Blast...
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2015-10-07 12:27:10 [OA INFO ] 90675 -- Done
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2015-10-07 12:27:10 [OA INFO ] 90184 -- --> 1 connected componants
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2015-10-07 12:27:10 [OA INFO ] 90184 -- Done
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2015-10-07 12:27:10 [OA INFO ] 90184 -- Installing SSC reference databases...
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2015-10-07 12:27:10 [OA INFO ] 90184 -- Done
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2015-10-07 12:27:10 [OA INFO ] 90184 -- Installing blast version of the SC_RefDB reference databases...
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2015-10-07 12:27:10 [OA INFO ] 90184 -- Done
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