obitools/ecopcr
2
0
Fork 0
Code Issues 4 Pull Requests Actions Packages Projects Releases 3 Wiki Activity

add a -k option to the ecoPCR binary to substitute superkingdom column by a kingdom column

Browse Source 
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@12 60f365c0-8329-0410-b2a4-ec073aeeaa1d
This commit is contained in:
Eric Coissac
2007-03-27 16:33:50 +00:00
parent 8c91d3d8f3
commit 420cdb877b
1 changed files with 5 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

5
src/ecopcr.c
View File

@ -413,6 +413,7 @@ int main(int argc, char **argv)
printf("# direct strand oligo1 : %-32s ; oligo2c : %32s\n", o1->cpat,o2c->cpat);
printf("# reverse strand oligo2 : %-32s ; oligo1c : %32s\n", o2->cpat,o1c->cpat);
printf("# max error count by oligonucleotide : %d\n",error_max);
printf("# database : %s\n",prefix);
if (lmin && lmax)
printf("# amplifiat length between [%d,%d] bp\n",lmin,lmax);
@ -420,6 +421,10 @@ int main(int argc, char **argv)
printf("# amplifiat length larger than %d bp\n",lmin);
else if (lmax)
printf("# amplifiat length smaller than %d bp\n",lmax);
if (kingdom_mode)
printf("# output in kingdom mode\n");
else
printf("# output in superkingdom mode\n");
printf("#\n");
taxonomy = read_taxonomy(prefix);