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178dd57e77
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patch the unmatched file opening
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2011-03-18 08:51:57 +00:00 |
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d531cf5914
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2011-03-15 12:11:27 +00:00 |
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821e8b219b
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Path loading of taxonomy
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2011-03-13 22:06:50 +00:00 |
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4e9e441dc6
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Path loading of taxonomy
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2011-03-13 22:06:05 +00:00 |
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5dfc4b969e
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2011-02-22 15:43:57 +00:00 |
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d96b8f9d9d
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first functional version of this profile nws algorithm
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2011-02-08 20:22:48 +00:00 |
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4ecde1f711
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Add a new class to represent DNA PSSM
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2011-02-07 08:56:08 +00:00 |
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d8fbaa4840
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patch vlen and hlen
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2011-02-07 08:55:18 +00:00 |
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225ce008db
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New implementation of the DynamicProgramation class
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2011-02-04 10:43:34 +00:00 |
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da0abda51f
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Add a new script obisort
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2011-02-03 21:01:13 +00:00 |
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7b6624e646
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source refactoring to remove obsolete import
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2011-02-03 18:53:39 +00:00 |
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85922a58e4
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2011-02-03 18:51:26 +00:00 |
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fab3224271
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2011-02-03 18:50:08 +00:00 |
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5c54d7a939
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Add a rank option allowing to add a rank attribute to sequences containing an integer value indicating the position of the sequence in the input file.
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2011-02-03 18:48:11 +00:00 |
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41ecd2b5e4
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Add annotation with mcl cluster
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2011-01-17 08:58:21 +00:00 |
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75d022b2e3
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change version number
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2010-12-16 14:29:25 +00:00 |
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5db68a3f32
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Add a new argument : 'restrict' to the formatFasta function
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2010-11-17 10:04:45 +00:00 |
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af47557319
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Compute error graph
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2010-11-02 14:13:55 +00:00 |
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ad956e35ab
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Switch version number to 0.2.001
This is a bug release
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2010-11-02 12:35:46 +00:00 |
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b30f711727
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Patch extention building wthout cython installed on the system
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2010-10-27 20:26:17 +00:00 |
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25b0297223
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2010-10-27 19:57:06 +00:00 |
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b695090a06
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2010-10-27 19:56:10 +00:00 |
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81538ff663
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Add a link on _upperbond.ext.1.c named _lcs.ext.4.c
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2010-10-27 12:36:25 +00:00 |
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6d01d73ac9
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Add a small patch for performances
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2010-09-23 09:40:03 +00:00 |
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9507f488c5
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Add information about taxonomy data merged
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2010-09-22 13:05:32 +00:00 |
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a46f9443db
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Patch a bug during writing of alias binary file
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2010-09-21 01:36:36 +00:00 |
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39485d9e84
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Add data about matches
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2010-09-13 08:20:11 +00:00 |
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a4cb73362e
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New version of ecoTag based on LCS length. ecoTag no more relies on Fasta35
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2010-09-10 09:18:16 +00:00 |
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00bb388197
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Patch LCS length computation
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2010-09-10 09:17:02 +00:00 |
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9b8752aa15
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Remove dependency on SSE2
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2010-09-04 05:40:41 +00:00 |
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ea44edcaac
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2010-09-04 05:31:44 +00:00 |
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e8c816c4c7
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2010-09-03 21:36:45 +00:00 |
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1f6ef0f620
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2010-09-03 21:35:46 +00:00 |
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8cde4c1b74
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2010-09-03 21:33:23 +00:00 |
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1ca4230f5a
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2010-09-03 21:05:16 +00:00 |
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7d994e9361
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2010-09-03 20:59:35 +00:00 |
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ea02c1d479
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2010-09-03 20:49:58 +00:00 |
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cf90a71b54
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2010-09-03 20:48:57 +00:00 |
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0be46c344e
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forgotten header file
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2010-09-03 20:39:41 +00:00 |
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e6bef5c6d0
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Switch to cython 0.13 and add code to remove dependences on SSE2 availability
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2010-08-31 13:10:24 +00:00 |
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124297a5cf
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Add --raw-fasta option for wrongly formated fasta file
Chance --upper-case to --uppercase
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2010-07-07 04:31:21 +00:00 |
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135d4d11c1
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2010-07-07 00:21:04 +00:00 |
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e944a2c404
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Add --upper-case option and a first version of obiselect
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2010-07-07 00:13:30 +00:00 |
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94905d419b
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Add fast computation of LCS upperbond using SSE2 SIMD intel instructions
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2010-06-20 13:16:47 +00:00 |
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b17698a181
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Explicit error on stderr when a tag is used twice.
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2010-05-21 06:31:15 +00:00 |
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2db75c1e40
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add *.h in the manifest and update to version 1.999
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2010-05-20 18:09:04 +00:00 |
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6bf034bcb5
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2010-05-20 14:33:36 +00:00 |
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6c76f27815
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2010-05-20 14:32:43 +00:00 |
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4408339a56
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2010-05-20 14:32:04 +00:00 |
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356ce0ba25
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patch a memory leak. You cannot resize an empty array
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2010-05-17 14:57:09 +00:00 |
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