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1c3fcac632
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Add a new obijoinpairend to join both the direct and reverse reads of a pair end sequencing with an n linker
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2011-10-07 11:00:33 +00:00 |
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ed8106a539
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Add alternative sampling strategy for large sequence file
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2011-10-07 07:32:21 +00:00 |
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e03a33488d
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ali2consensus.py initial version
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2011-09-30 15:23:52 +00:00 |
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f6b96188ce
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patch a bug for -a option
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2011-09-23 16:08:03 +00:00 |
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747249f93b
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add _localtaxon attribute to the TaxonomyDump instance
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2011-09-23 14:41:38 +00:00 |
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ef88f843ae
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add _nameidx attribute to TaxonomyDump
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2011-09-23 14:28:49 +00:00 |
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cc336bf5a0
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patch error on count attribute (work around)
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2011-09-05 13:49:21 +00:00 |
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6ff8005751
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Test
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2011-08-30 12:48:06 +00:00 |
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4ec0566597
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Skip sequence of null length in solexaPairEnd
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2011-08-29 14:53:36 +00:00 |
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496fbebe7d
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removed ecoTaxSpecificityWithErr.py
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2011-07-26 15:05:15 +00:00 |
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f4e6dc1882
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Added Errors and Quorum in ecoTaxSpecificity.py
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2011-07-26 12:58:57 +00:00 |
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078a1c8328
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Add a capacity for taxonomy to manage extension to it through the notion of local taxa
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2011-07-19 06:48:42 +00:00 |
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a0fca4cfd8
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Consider partial match with IUPAC codes as full match for primer detection
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2011-07-15 14:23:06 +00:00 |
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0c792ac886
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Add a new version of freeendgapfullmatch with full match reward for partial matching
with IUPAC code
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2011-07-15 14:19:24 +00:00 |
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0ff107fb19
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Add a new version of freeendgapfullmatch with full match reward for partial matching
with IUPAC code
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2011-07-15 14:18:32 +00:00 |
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3eb15c4b88
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patch the tag file reading
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2011-07-15 12:51:07 +00:00 |
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2a9cd0ddcd
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add two files, ecoTaxSpecificityWithErr.py and ecoTaxSpecificityEx.py
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2011-06-26 15:13:07 +00:00 |
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01a1b7d801
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patch backtracking of reverse assemble
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2011-06-24 10:18:20 +00:00 |
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12e746f492
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Change the tag description file format. Tag can now be a single tag or a pair of tags separated by a colon.
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2011-06-18 06:05:22 +00:00 |
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850fac46e0
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2011-06-17 14:57:07 +00:00 |
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ea05affb10
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add categories attribute to determine uniqueness
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2011-06-16 20:42:38 +00:00 |
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253b76c3d3
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add categories attribute to determine uniqueness
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2011-06-16 20:36:50 +00:00 |
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5d1c12100c
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add categories attribute to determine uniqueness
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2011-06-16 20:33:59 +00:00 |
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450328a78d
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Asking for tags count to a sequence now always success and return 1 by default
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2011-06-16 20:24:43 +00:00 |
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0b29ecab80
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move the --rank option to the bioseqedittag option set
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2011-06-16 16:51:34 +00:00 |
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f66aaab769
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move the --rank option to the bioseqedittag option set
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2011-06-16 16:51:23 +00:00 |
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9bafa0ed19
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compute sum of count per category and print them as a new column named total
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2011-06-16 15:02:39 +00:00 |
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4133a16a6a
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completely new implementation of ngsfilter
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2011-06-15 21:34:04 +00:00 |
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b8d966c641
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simplify code according to the new progressBar feature
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2011-06-15 21:32:09 +00:00 |
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e5698e41b4
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add code to progressBar function to adjust automatically the refresh frequency
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2011-06-15 21:30:08 +00:00 |
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2270bb24f3
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Patch attributes reading in fastq file
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2011-06-14 12:12:24 +00:00 |
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280d2a1049
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Patch attributes reading in fastq file
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2011-06-14 12:12:02 +00:00 |
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14381847a2
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add taxonomy to the context of evaluation of arguments
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2011-05-10 12:14:35 +00:00 |
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ea119a5986
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add taxonomy to the context of evaluation of predicat
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2011-05-10 12:12:48 +00:00 |
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ea8a94f1f5
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add taxonomy to the context of evaluation of arguments
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2011-05-10 12:11:38 +00:00 |
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3876ac6bd6
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add taxonomy to the context of evaluation of predicat
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2011-05-10 12:07:05 +00:00 |
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d5d73c584b
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Patch management of of sequence annotation for WrappedBioseq
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2011-04-21 20:17:13 +00:00 |
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6f8c0acbb2
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Patch management of of sequence annotation for WrappedBioseq
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2011-04-21 20:00:09 +00:00 |
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423ebc56ea
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patch the bug in isLCSReachable
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2011-04-21 19:56:29 +00:00 |
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778cdaa50c
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work around a bug in isLCSReachable
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2011-04-20 19:09:28 +00:00 |
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cf9a55f499
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Patch management of of sequence annotation
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2011-04-15 05:22:29 +00:00 |
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f89cd09d03
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Patch management of of sequence annotation
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2011-04-15 05:21:06 +00:00 |
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8beee26e57
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Patch management of of sequence annotation
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2011-04-15 05:20:46 +00:00 |
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baad23d556
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Patch spelling of option names and descriptions
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2011-04-15 05:17:34 +00:00 |
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4ec636ab0f
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Add obiclean a new obitools
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2011-04-15 05:15:31 +00:00 |
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7d8ddcb161
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Patch on to obitools
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2011-04-15 05:14:36 +00:00 |
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f1f6489b10
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Some patch to ecoTag
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2011-04-11 14:29:14 +00:00 |
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929b2e40b0
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Patch "Direct Partiel" log
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2011-04-07 19:24:06 +00:00 |
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0c3900c0e1
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Patch reading of reference DB from a file
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2011-04-01 08:31:46 +00:00 |
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59be077f81
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tag version 0.2.200
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2011-03-29 11:17:06 +00:00 |
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