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86547c55d1
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fixed some problems with the errors in BcTree.
Now, if error number > ecoPCR threshold, value = -1.
However the tree is still not really easy to read (regarding the errors).
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2011-12-01 11:20:47 +00:00 |
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cf134421c8
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fixed the tree problem (bc = 0.0 and not 0 when no coverage)
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2011-11-28 11:39:04 +00:00 |
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dcce84cd63
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rounded Bc and error values
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2011-11-26 14:42:48 +00:00 |
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acadf345a7
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added the average number of errors for each group
(but tree settings still not working)
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2011-11-26 14:03:33 +00:00 |
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d77635e188
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2011-11-25 16:46:52 +00:00 |
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fcd01b64e2
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2011-11-25 16:45:33 +00:00 |
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2eace42b84
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correcting little errors
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2011-11-25 16:44:22 +00:00 |
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55cdeb7564
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adding the package for computing Bc and drawing the tree
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2011-11-25 16:32:23 +00:00 |
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ea2504e601
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2011-11-25 14:47:48 +00:00 |
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0c02b642d9
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2011-11-25 14:47:17 +00:00 |
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69a7c2c9a4
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Edited the doc
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2011-11-24 14:35:33 +00:00 |
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3374a79c75
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Edited the obicomplement and obiselect doc
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2011-11-24 08:48:20 +00:00 |
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e951ca7fcd
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Edited the obiannotate doc
<TODO> Complete doc in the sphinx section (scripts/obiannotate.rst)
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2011-11-17 10:58:05 +00:00 |
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4c022a4a21
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patch getRoots bug
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2011-11-17 10:41:02 +00:00 |
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fded1e57da
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Set fastaUniq as a DEPRECATED script (and remove it from trunk)
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2011-11-16 12:58:57 +00:00 |
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0c45a72de5
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add progdoc argument
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2011-11-16 12:50:51 +00:00 |
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15a16459fa
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2011-11-16 12:46:46 +00:00 |
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5cbcc4d281
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Doc edition
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2011-11-16 12:34:54 +00:00 |
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d138b38dd3
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2011-11-16 12:32:10 +00:00 |
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74e9746e70
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Add an option in relation with obigraph
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2011-11-12 07:14:15 +00:00 |
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5b87b80059
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new version of ecoTags according to the change in obitools.align.lenlcs function api changes
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2011-11-12 07:12:07 +00:00 |
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edc0e17882
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optimize the len function of BioSequence
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2011-11-12 07:11:02 +00:00 |
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02e67dfd83
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Optimize the progress bar
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2011-11-12 07:10:21 +00:00 |
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3f9da85e6d
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new module to analyze properties of metabarcoding primers
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2011-11-12 07:09:32 +00:00 |
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67266c5510
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Doc edition + some small patches on graph api
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2011-11-12 07:05:47 +00:00 |
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bc4366dabb
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Doc edition
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2011-11-12 07:03:30 +00:00 |
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ff3420b5a1
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2011-11-12 07:00:38 +00:00 |
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60c64fd2ef
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2011-11-12 07:00:19 +00:00 |
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f5f5ba8182
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add in operator on taxonomy
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2011-11-12 06:58:54 +00:00 |
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9741276a94
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compute the length of the alignment corresponding to the LCS. this allows
accurate computation of distances from LCS where mismatches and indels count
for 1 unit of distance each.
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2011-11-12 06:56:19 +00:00 |
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f98dd1e7e6
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doc
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2011-10-30 12:47:47 +00:00 |
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f13f701f0e
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add doc + patch on subgraph method
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2011-10-30 12:45:00 +00:00 |
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1eda28068c
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cleannin obitools doc
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2011-10-30 05:09:27 +00:00 |
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cc1da327ef
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2011-10-30 05:04:37 +00:00 |
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633a54186f
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cleannin obitools doc
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2011-10-30 05:03:11 +00:00 |
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edb2ee62cd
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cleannin obitools doc
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2011-10-30 05:02:29 +00:00 |
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0617a020bc
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remove build folder from repository
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2011-10-29 09:14:02 +00:00 |
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6e882b57a9
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add a copy of the raw script source to the build directory for helping documentation generation
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2011-10-27 01:10:27 +00:00 |
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c19dfda8d1
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Sphinx documentation
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2011-10-27 01:06:30 +00:00 |
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fa1d496906
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Sphinx documentation
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2011-10-27 01:05:19 +00:00 |
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0ba055b4d3
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Add sphinx extension for documentation
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2011-10-27 01:04:48 +00:00 |
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608878cf75
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Sphinx documentation
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2011-10-27 01:02:20 +00:00 |
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bfd7fa7c8b
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correct documentation
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2011-10-26 11:09:32 +00:00 |
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8dd20d1839
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Sphinx documentation
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2011-10-26 09:48:03 +00:00 |
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a82e406b12
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Sphinx documentation
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2011-10-26 09:39:32 +00:00 |
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bea64faf6a
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switch docstring to sphinx
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2011-10-26 09:37:51 +00:00 |
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0518f5146b
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add a counter variable in the evaluation environment used for modifying attributes, id, definition and sequences
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2011-10-24 13:32:35 +00:00 |
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e34727e7aa
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patch bug in the build of the new sequence
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2011-10-24 08:02:19 +00:00 |
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d409c88284
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Patch a bug with undefined count tag in sequences
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2011-10-07 12:38:54 +00:00 |
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5ef8e0c802
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add an option to specify the quality score of the added N
|
2011-10-07 11:11:25 +00:00 |
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