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8c593bfb13
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patch the -a selection option
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2009-12-17 21:10:24 +00:00 |
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d4c180122f
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patch on fastaHead and fastaTail
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2009-12-17 07:00:55 +00:00 |
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79c61ca4a8
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script doc...
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2009-12-17 07:00:14 +00:00 |
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024d8a1fe8
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add two new scripts :
fastaHead and fastaTail
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2009-12-15 21:38:16 +00:00 |
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d2fdf6bf0c
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remove extra import
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2009-12-10 20:46:08 +00:00 |
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4b9ad7e9cf
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remove extra import
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2009-12-10 20:44:52 +00:00 |
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d51dc2c612
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remove extra import
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2009-12-10 20:43:58 +00:00 |
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8f364f9e0e
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add filtering option to fastaComplement
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2009-12-10 20:43:12 +00:00 |
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44ec34b386
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remove extra sys import
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2009-12-10 16:54:06 +00:00 |
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782ad9371b
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patch a bug in _extractsequence of ComplementLocation
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2009-12-10 16:53:27 +00:00 |
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87e11a195b
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create AlignedSequence class
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2009-12-10 16:49:26 +00:00 |
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dd83272aa7
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remove extra import
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2009-12-10 16:48:59 +00:00 |
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90a0dff84d
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remove extra import
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2009-12-10 16:46:24 +00:00 |
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f78bb14b6c
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remove extra sys import
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2009-12-10 16:44:04 +00:00 |
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cd4c1b1cad
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2009-12-10 15:27:34 +00:00 |
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b202125538
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remove out dated method (functionalities transfered since a long time to BioSequence)
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2009-12-10 15:02:39 +00:00 |
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9b3166dfaa
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First draft of a sphinx doc
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2009-12-10 14:19:48 +00:00 |
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18ced69908
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Patch bug in alignment
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2009-12-10 13:19:31 +00:00 |
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e6477f0d07
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Add alignment algorithm to obitools
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2009-12-10 12:57:20 +00:00 |
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4f6c374c8f
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remove id and definition alteration done by WrappedBioSeq
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2009-12-10 09:42:56 +00:00 |
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e277a7bbe5
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patch access to sequence key for WrappedBioseq
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2009-12-10 08:59:07 +00:00 |
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4919f4f1af
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Add two new obitools script fastaCount and fastaSample
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2009-11-01 16:39:00 +00:00 |
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0896bf77d5
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Add two new obitools script fastaCount and fastaSample
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2009-11-01 16:38:33 +00:00 |
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b9cd5f006b
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shift to version 0.1.3
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2009-10-22 08:10:28 +00:00 |
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2a1f715205
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2009-10-21 22:39:12 +00:00 |
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c34854e473
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2009-10-21 22:29:50 +00:00 |
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4943dbe904
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2009-10-21 22:19:57 +00:00 |
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7ab18e874e
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2009-10-21 22:17:46 +00:00 |
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40083456a8
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2009-10-21 22:12:10 +00:00 |
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863ee26562
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shift to version 0.1.2
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2009-10-21 21:51:56 +00:00 |
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d864bcac04
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Change to output to annotated fasta. Older output mode is available with -T option
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2009-10-21 21:27:02 +00:00 |
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208347fccf
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remove fasta35 stderr output
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2009-10-21 21:25:52 +00:00 |
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ff496f77ac
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Add a patch to eliminate divide by 0 during speed printing
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2009-10-21 20:14:18 +00:00 |
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cfa31aa0d2
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New version of setup.py script taking into account pyrex file and corresponding c file generation in the source directory
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2009-10-16 20:40:32 +00:00 |
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13fbc16a3e
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New version of setup.py script taking into account pyrex file and corresponding c file generation in the source directory
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2009-10-16 20:33:21 +00:00 |
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b1b6833003
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2009-10-16 20:30:56 +00:00 |
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d1e473214e
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New version of setup.py script taking into account pyrex file and corresponding c file generation in the source directory
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2009-10-16 15:19:09 +00:00 |
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ef46d42467
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2009-10-16 15:18:12 +00:00 |
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0f06dda68f
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change in the script map
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2009-10-14 16:32:59 +00:00 |
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c99f4cf1e0
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change input file format from fna fasta file to standard obi fasta file. Use convert2fasta script before using fasta454filter script to convert fna file to obi file
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2009-10-14 15:28:55 +00:00 |
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d84d6d48e9
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code cleaning on obitools.word
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2009-10-14 15:05:49 +00:00 |
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ecef476a09
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2009-10-14 13:48:12 +00:00 |
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110ae8ddd8
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add a new script buildOBITaxonomy to compile a taxonomy db in obitool format from NCBI taxdump directory
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2009-10-13 14:11:45 +00:00 |
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272cfd1903
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2009-10-13 14:03:33 +00:00 |
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5aab98c74e
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Set a faster implementation of getTaxonAtRank
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2009-10-13 14:00:59 +00:00 |
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84fa97b865
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patch a bug in __contains__ method
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2009-10-13 13:53:23 +00:00 |
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73d9cdb3ed
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Add capacity to annotate sequence with taxonomy data
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2009-10-13 13:47:19 +00:00 |
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02a2cb8808
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Add capacity to annotate sequence with taxonomy data
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2009-10-13 13:44:52 +00:00 |
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5cc39dcb0e
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remove automatic annotation with taxonomy information when requested rank filter is activated
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2009-10-13 13:24:25 +00:00 |
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45b90c7f81
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remove input format option from fasta grep, use instead the new convert2fasta script
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2009-10-13 13:21:29 +00:00 |
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