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619eebf69c
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draft loi hypergeometrique
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2009-02-12 12:40:06 +00:00 |
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ac09697b7b
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Patch the -a option
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2008-12-17 12:32:01 +00:00 |
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0d0067bcc4
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2008-12-16 14:48:28 +00:00 |
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75b1f29c89
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un fichier test
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2008-12-16 14:44:45 +00:00 |
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7cec520cb4
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Commit of package utils.iterator
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2008-11-04 13:10:56 +00:00 |
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84f104677e
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Path bug related with Wrapped bioseq introduction
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2008-10-31 08:42:59 +00:00 |
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cd81a19121
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Add input output map
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2008-10-24 21:58:06 +00:00 |
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3b3623ec87
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Add two new scripts to analyse ecotag results
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2008-10-21 16:16:57 +00:00 |
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e970779f8c
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Add new parser for ecotag result files
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2008-10-21 16:16:27 +00:00 |
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7196e6901f
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add function to manage input file informations
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2008-10-20 10:37:41 +00:00 |
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a831dc146d
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bug correction in universaltell and filesize function
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2008-10-20 10:35:53 +00:00 |
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98b677a8b1
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GeneOntology Access file reader
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2008-10-20 10:33:15 +00:00 |
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3d20fb3e30
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loi hypergeometrique
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2008-10-20 10:31:50 +00:00 |
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e53c39bb8b
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2008-10-09 08:47:41 +00:00 |
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9734a0dc71
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2008-10-08 14:59:50 +00:00 |
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dcc7588e37
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* use obitools/obo/go/parser.py, a specific OBO Go parser
* got from microbi implementation (FlatFile) ...
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2008-10-08 14:41:58 +00:00 |
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db529fac5f
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2008-10-08 13:58:09 +00:00 |
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df2c09d494
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specify the OBO parser to the GeneOntology OBO format
GOTerm inherits OBOTerm
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2008-10-08 08:34:07 +00:00 |
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cea1cb2fbb
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small bugs patches
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2008-10-07 13:50:12 +00:00 |
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004a5639d1
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_getNamespace in OBOTerm
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2008-10-07 11:01:48 +00:00 |
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bcbbaea78c
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a 'namespace' property in the OBO format
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2008-10-06 16:33:54 +00:00 |
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fa0636029a
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Parser OBO + contraintes GO - corrections de Sophie
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2008-10-05 10:43:11 +00:00 |
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4d4d53a37e
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* OBOTerm objects newly own 'namespace' and 'relationship' attributes
* API changed from 'replace_by' into 'replaced_by' OBOTerm attribute
* manage some None returns into getters
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2008-10-03 16:02:06 +00:00 |
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0d8dd86ace
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patch bug in ecotag for undefined taxon at a specific rank (line 217)
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2008-10-03 15:23:35 +00:00 |
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e9ce603cc3
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add taxonomic facilities to fastaGrep and fastaUniq utilities
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2008-10-03 14:59:19 +00:00 |
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6e89e28056
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force reading of sequences as nucleic sequences
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2008-10-03 08:05:09 +00:00 |
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33223ea5aa
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patch on bioseqEditTags
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2008-10-01 16:08:16 +00:00 |
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a89ab2481b
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remove old tools fastaAddTag and fastaRenameTag
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2008-10-01 15:35:45 +00:00 |
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46cb6e759a
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add fastaEditTag tool
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2008-10-01 15:33:00 +00:00 |
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2665d987a2
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Allow usage of iupac dna code in tagMatcher file reader
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2008-09-04 15:38:51 +00:00 |
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3106f29954
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2008-09-04 15:24:17 +00:00 |
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1fe95f889d
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script used to filter tagmatcher output file
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2008-09-02 14:07:13 +00:00 |
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0b9714ec7b
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Add reading and writing function for datafile in TagMatcher format
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2008-09-02 14:06:15 +00:00 |
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665cd722db
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add dnaparser sub module
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2008-07-25 14:54:27 +00:00 |
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b3d98ab717
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Add a writer for ecoPCRFile
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2008-07-11 06:13:40 +00:00 |
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a2966156dc
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2008-07-07 15:09:50 +00:00 |
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dc4ea3686a
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2008-07-07 15:09:29 +00:00 |
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83e9e31bf2
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Add embl reader
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2008-06-30 10:24:02 +00:00 |
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a22b9f8e0d
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refactor the fasta reader
add getGloc method to Location class
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2008-06-30 10:22:15 +00:00 |
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5391028ec8
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Patch bug in subseq
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2008-06-23 14:20:32 +00:00 |
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1f035b38bc
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2008-06-09 14:04:45 +00:00 |
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82cf928d87
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2008-06-09 14:03:45 +00:00 |
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6a8bacd693
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2008-06-09 14:03:08 +00:00 |
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54958ba992
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2008-06-09 14:02:54 +00:00 |
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dff5c86be8
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Bug correction on fastaGrep.py
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2008-06-02 10:19:34 +00:00 |
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d5fbfa6e50
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2008-06-02 10:02:43 +00:00 |
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0bf1761df6
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New script to preprocess CNS 454 file
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2008-06-02 10:01:57 +00:00 |
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976bf74dc2
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New script to split a fasta database in several files
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2008-06-02 10:00:57 +00:00 |
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4c47130328
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Add filtering option on subject coverage (-C)
Add option for printing sequence (-o)
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2008-06-02 09:59:10 +00:00 |
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b92032560c
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add begin and end attributes to locations
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2008-05-06 14:18:27 +00:00 |
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