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6dd5422caa
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2008-02-19 17:21:45 +00:00 |
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fb633f8472
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2008-02-19 17:21:26 +00:00 |
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241e01b277
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New version of the API documentation
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2008-02-19 17:05:59 +00:00 |
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7ef35faac3
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Add CacheDB class to utils module
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2008-02-19 17:00:20 +00:00 |
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1c58d751d3
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patch on fastaComplement script, need to be refactored
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2008-02-19 16:59:43 +00:00 |
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60c0a54d73
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Add new script to dump sequence by blast request -- initial version not fully functional
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2008-02-19 16:58:53 +00:00 |
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2022b632f5
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add two new script for sequence statistics
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2008-02-19 16:56:36 +00:00 |
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ee8e3fa231
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patch fasta parser to deal with extra spaces in tag values
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2008-02-19 16:54:51 +00:00 |
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646f3d5f72
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code refactoring to rename oligo to word
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2008-02-19 16:53:40 +00:00 |
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0909345694
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large improvement in table management
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2008-02-19 16:52:50 +00:00 |
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93a8e4cddc
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modify complement encoder to deal with lower case sequences
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2008-02-19 16:52:15 +00:00 |
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0583a2373e
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large improvement of the genbank access and parsing
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2008-02-19 16:51:04 +00:00 |
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7d65f763e4
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obliged sequence to be in lower case
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2008-02-19 16:50:16 +00:00 |
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2e24afc639
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new module that resume input parsers and output formaters
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2008-02-19 16:49:37 +00:00 |
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d26aa7aeb7
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add lock feature to limit concurrent access in multithreaded scripts
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2008-02-19 16:48:41 +00:00 |
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f08c0876b3
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patch location and feature module
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2008-02-19 16:47:47 +00:00 |
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ecb2e48623
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Add blast interface module
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2008-02-19 16:47:20 +00:00 |
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78c36080a2
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2008-02-15 11:01:10 +00:00 |
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c020231e91
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merge genbank and genpep module
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2008-02-15 10:39:03 +00:00 |
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e5fe49ba1e
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Change id sequence definition in ecopcr2fasta script
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2008-02-13 16:06:01 +00:00 |
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c31cc3dea0
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Change id sequence definition in ecopcr2fasta script
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2008-02-13 16:04:08 +00:00 |
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f72c279496
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rename nucdb package to biodb
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2008-02-08 17:15:49 +00:00 |
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f6dc6139e3
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rename nucdb package to biodb
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2008-02-08 17:15:33 +00:00 |
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88074cfe24
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2008-02-01 09:39:36 +00:00 |
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92392ecbbd
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2008-02-01 09:35:44 +00:00 |
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072c7e0acc
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2008-02-01 09:35:10 +00:00 |
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6ee13ba008
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2008-01-31 21:55:57 +00:00 |
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1ab7657d68
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add Genbank parser
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2008-01-31 21:55:31 +00:00 |
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4688d3791e
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Add new classes to represent genomic locations and feature as describe in genbank and embl format
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2008-01-31 18:20:49 +00:00 |
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bf6ab41fb9
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2008-01-10 08:56:23 +00:00 |
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459ed88486
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Add option -p to ecopcr2fasta.py script
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2007-12-18 17:28:57 +00:00 |
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532dd0d79b
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bug correction on ecoTaxSpecificity.py
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2007-12-18 17:13:35 +00:00 |
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262617d2cf
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Add scripts for ecopcr analysis
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2007-12-17 16:45:57 +00:00 |
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e891ba039b
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Change fastaComplement script name to fastaComplement.py
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2007-12-17 13:47:22 +00:00 |
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baf335295f
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Bug correction in fastaCut.py
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2007-12-13 08:53:59 +00:00 |
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cd3fc11aa3
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bug correction on fastaLocate
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2007-12-13 08:47:01 +00:00 |
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4e024c63d5
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2007-12-11 13:05:42 +00:00 |
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4728e80e24
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2007-12-11 06:33:29 +00:00 |
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7c1276246b
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Add dnahash module
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2007-12-10 17:07:39 +00:00 |
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a2967a06fb
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Add graph module independent with networkx
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2007-12-07 12:33:32 +00:00 |
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b9ea342677
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2007-11-30 17:30:41 +00:00 |
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c53b6a0c42
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2007-11-30 17:05:11 +00:00 |
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340b78c087
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2007-11-23 14:24:24 +00:00 |
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6a1391c199
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ajoute une version greedy de l'algo de recherche de clique max
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2007-11-23 12:19:11 +00:00 |
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7b62fb6fbe
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2007-11-16 13:42:21 +00:00 |
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b9d244761f
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2007-11-16 13:36:24 +00:00 |
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f955ee6a28
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2007-11-15 09:53:44 +00:00 |
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34a85e1fd0
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2007-11-15 09:53:19 +00:00 |
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ab51f73785
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2007-11-15 09:52:32 +00:00 |
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013e1bbb30
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2007-10-24 10:30:06 +00:00 |
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