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e775801a37
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remplace le print par un debug()
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2008-05-05 10:12:40 +00:00 |
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ba64835bcc
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Doc API
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2008-04-29 11:08:17 +00:00 |
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cba960a9d3
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Doc API
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2008-04-29 11:07:08 +00:00 |
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d090e11d12
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Add solexa reader
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2008-04-29 11:05:41 +00:00 |
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89ea37b559
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2008-04-28 07:50:13 +00:00 |
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251b88bf1e
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patch for negative shift
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2008-04-16 08:09:37 +00:00 |
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82e1778714
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New version of the api documentation
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2008-04-15 16:58:36 +00:00 |
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eabe06f11b
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modify option in epydoc
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2008-04-15 16:45:31 +00:00 |
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378ec0e472
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New version of the api documentation
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2008-04-15 16:44:44 +00:00 |
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83f38dfa22
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Correction of docstrings
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2008-04-15 16:42:42 +00:00 |
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142b1c2e0f
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fastaUniq uses uniqSequence method
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2008-04-15 16:20:11 +00:00 |
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740e23888a
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add ace2fasta.py script
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2008-04-15 16:19:07 +00:00 |
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225f0e795e
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Add new module to manage alignment <<preliminary version>>
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2008-04-15 16:18:10 +00:00 |
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50a25e1396
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modify run method return
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2008-04-15 16:17:18 +00:00 |
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ec437f9377
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add findRankByName method to Taxonomy class
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2008-04-15 16:15:59 +00:00 |
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1bf519a8d8
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extract parsing of description from fasta parsing
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2008-04-15 16:14:33 +00:00 |
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3b4eef7f45
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Add unique and sort option to ecoTag
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2008-04-15 16:13:41 +00:00 |
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dcf8bbffcb
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swith utils to package
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2008-04-14 15:12:33 +00:00 |
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594a208165
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Add a gzip module allowing to work on stream
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2008-04-10 10:07:22 +00:00 |
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2fbb894412
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Add a -x option to the ecoTag.py script
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2008-04-10 10:00:11 +00:00 |
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b7e93c475c
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2008-04-09 16:59:27 +00:00 |
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b742c605b5
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dans utils.py : obitools.gzip ==> gzip
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2008-04-09 09:46:47 +00:00 |
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de2ccb6415
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parser OBO commenté
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2008-04-08 16:04:04 +00:00 |
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52196563db
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New API documentation generation
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2008-04-08 15:18:28 +00:00 |
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63000f3cd5
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add extra function used mainly in obo parser
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2008-04-08 15:15:43 +00:00 |
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7383f8ec66
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bug correction
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2008-04-08 15:15:05 +00:00 |
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6478c6e143
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Add OBO ontology parser
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2008-04-08 15:14:47 +00:00 |
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629b0659f9
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2008-04-08 11:00:08 +00:00 |
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6605d1bdb5
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Add a new generic parser
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2008-04-03 05:51:41 +00:00 |
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de2b771e19
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Add some docs to fasta module
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2008-03-18 17:02:40 +00:00 |
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f5c818bff2
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tools for parse cns data files
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2008-03-18 15:15:46 +00:00 |
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6e5e23c1fe
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add a join function to join array
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2008-03-18 15:14:54 +00:00 |
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4fa7a3b009
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Convert fastaComplement to the new option management system
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2008-03-17 11:30:20 +00:00 |
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835b7ca574
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Convert fastaLength to the new option management system
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2008-03-17 10:40:35 +00:00 |
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3059874da2
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bug correction on parsing error
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2008-03-12 15:44:38 +00:00 |
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fa858bebf3
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add gbmode parameter to formatFasta function
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2008-03-12 15:44:04 +00:00 |
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8a1abbf1fb
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Add an extra column in ecoTag output to indicate lower identity bound used in identification process
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2008-03-12 15:43:07 +00:00 |
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7835cfaf21
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Add 'in' operator to BioSequence
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2008-03-12 14:31:08 +00:00 |
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12516c9a07
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Add management of parsing error for qualifier
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2008-03-12 14:30:30 +00:00 |
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6d7f8d1a3b
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Add a skipError parameter on the getFeatureTable method
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2008-03-12 14:29:03 +00:00 |
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7f0b6671b3
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Add a default -D (--DEBUG) option that switch logging in debug mode.
Now all scripts have this option
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2008-03-12 14:27:31 +00:00 |
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e93a2ea2ec
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Allow to define special tag regex in fasta reading functions
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2008-03-11 16:29:31 +00:00 |
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b73243df25
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Add extractCDS.py script to extract CDS from Genbank DB file.
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2008-03-10 18:29:33 +00:00 |
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ad1c211c8d
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remove call to old oligo module
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2008-03-06 16:02:13 +00:00 |
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08a709592f
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Add functionnal version of bron and carbosh algorith for clique finding
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2008-03-06 15:27:17 +00:00 |
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a92f16f253
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commit test
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2008-03-04 17:06:56 +00:00 |
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731fc73c4d
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2008-02-19 18:02:44 +00:00 |
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6584f069ed
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Add log in data fetching on stderr
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2008-02-19 18:02:06 +00:00 |
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04f2a50a1a
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2008-02-19 17:52:06 +00:00 |
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62c87a3986
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2008-02-19 17:51:23 +00:00 |
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