eb5d1a07af
Remove fastacns2obi script and replace it by a more general one convert2fasta.py
2009-10-13 13:14:47 +00:00
678c2b3459
Add code to automagically manage taxid attribute in sequence
2009-10-13 12:44:32 +00:00
989be1189d
patch findTaxonByTaxid method to take care of deleted taxa
2009-10-13 12:16:23 +00:00
3acc0abb1f
Take care of sequences with taxid < 0
...
Consider that these sequences have no taxid
2009-10-12 16:56:01 +00:00
e0605ce84e
Take care of sequences with taxid < 0
...
Consider that these sequences have no taxid
2009-10-12 16:54:42 +00:00
2e8871fa9d
Take care of sequences with taxid < 0
...
Consider that these sequences have no taxid
2009-10-12 16:52:08 +00:00
c61e0337b0
2009-10-12 16:25:12 +00:00
3ebc960bbf
revert to old version
2009-10-12 16:19:03 +00:00
682f8d5d3e
add annotation about rank during rank filtering
2009-10-12 16:17:15 +00:00
92c65760f7
2009-10-12 16:15:06 +00:00
011008bfa7
add annotation about rank during rank filtering
2009-10-12 16:04:27 +00:00
e38ad9d735
add annotation about rank during rank filtering
2009-10-12 15:56:49 +00:00
3a1d1078af
add annotation about rank during rank filtering
2009-10-12 15:56:30 +00:00
29fcf11ece
add annotation about rank during rank filtering
2009-10-12 15:49:35 +00:00
550627095f
add annotation about rank during rank filtering
2009-10-12 15:47:51 +00:00
295ca9b8f6
add option to specify input format in fastaGrep
2009-10-12 15:34:07 +00:00
1dbcc956ab
add option to specify input format in fastaGrep
2009-10-12 15:29:15 +00:00
dac24b79f8
add option to specify input format in fastaGrep
2009-10-12 15:28:26 +00:00
067c5cdf74
add option to specify input format in fastaGrep
2009-10-12 15:25:26 +00:00
4c78587274
Rename cns format to fnaFasta format
2009-10-12 14:51:22 +00:00
a05238c575
Rename cns format to fnaFasta format
2009-10-12 14:48:53 +00:00
4b6d0b0abd
Rename cns format to fnaFasta format
2009-10-12 14:46:40 +00:00
6f469c5d66
path the _isNuc method to take into account sequence of length null
2009-10-07 19:47:13 +00:00
dc9867b675
add new obitools script to convert cns fasta files to obi fasta files (add ; to headers)
2009-09-18 17:09:34 +00:00
f304309fdd
Patch fasta reader to accelerate fasta header parsing
2009-09-18 17:07:06 +00:00
22270b2602
Patch the rawiteritems function from WrappedBioSequence
2009-09-18 17:06:14 +00:00
5c9e608ccd
New obitools script to analyze cDNA 454 sequences
2009-09-18 17:05:05 +00:00
9fcdb31d65
changed name of saved rawfiles to remove the gz extension
2009-09-18 14:24:42 +00:00
657bf134e8
patch a bug in taxonomy filter
2009-09-18 13:57:24 +00:00
b0f90494bf
Add option to save a copy of the embl file
2009-09-18 13:22:34 +00:00
d02ca76c66
2009-07-27 22:39:07 +00:00
79dbbb8a6b
Add new version of function fastaUniq taking into account the merge attribute
2009-07-27 22:38:23 +00:00
7219a11d3d
patch syntax bug
2009-07-27 17:51:52 +00:00
1568bec537
Add new script fasta2tab
2009-07-27 17:49:26 +00:00
d2a97eeb7e
patch syntax bug
2009-07-27 17:37:57 +00:00
ca485e9ebe
Add new version of function fastaUniq taking into account the merge attribute
2009-07-27 17:35:44 +00:00
0216e59af1
Add a merge option on fsyaUniq.py
2009-07-27 17:13:22 +00:00
f030be4801
Save dump in binary format
2009-07-27 16:26:21 +00:00
77e4935a41
Change taxonomy option
2009-07-27 16:14:48 +00:00
8528ddeadc
* class OBOEntry, ajout de l'attribut stanza self["stanza"]
...
* class OBOTerm:
* ajout de la propriété stanza + sa méthode getter
* test obsolete: suppression de la contrainte 'is_a'... slot pas obligatoire pour un term obsolete
* methode getReplaceBy renommée en getReplacedBy
2009-07-24 11:31:44 +00:00
10082b2c15
new version of the api documentation in html
2009-07-22 08:50:44 +00:00
f5e5168ec8
clean html api doc
2009-07-22 08:47:05 +00:00
2080123867
Split taxonomy options in two sets
2009-07-21 18:27:04 +00:00
17c21ba875
Change ecotag parser to conform to the new ecotag format
2009-07-21 18:26:12 +00:00
2786acd295
Rename fastaEditTag.py to fastaAnnotate.py
2009-06-23 16:04:22 +00:00
43523d5859
2009-06-19 12:52:41 +00:00
29d1134181
delete RDP2 database release from archive
2009-06-19 12:49:16 +00:00
30e149a9ff
2009-06-18 12:06:39 +00:00
ef88897465
2009-05-13 22:08:05 +00:00
5f4c894bab
add fastaAddTaxid.py script
2009-03-19 21:59:08 +00:00
