obi import: fixed to work with seq genbank extension

2020-05-20 10:28:14 +02:00
parent 76ed8e18e5
commit ca6e3e7aad
1 changed files with 2 additions and 0 deletions
--- a/python/obitools3/parsers/genbank.pyx
+++ b/python/obitools3/parsers/genbank.pyx
@ -171,6 +171,8 @@ def genbankIterator_dir(dir_path,
    read = 0
    read_files = 0
    files = [filename for filename in glob.glob(os.path.join(path, b'*.gbff*'))]
+    files.extend([filename for filename in glob.glob(os.path.join(path, b'*.seq*'))])  # new genbank extension
+    files = list(set(files))
    for filename in files:
        if read==only:
            return