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obi import: fixed to work with seq genbank extension

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Celine Mercier
2020-05-20 10:28:14 +02:00
parent 76ed8e18e5
commit ca6e3e7aad
1 changed files with 2 additions and 0 deletions
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python/obitools3/parsers/genbank.pyx
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@ -171,6 +171,8 @@ def genbankIterator_dir(dir_path,
read = 0 read = 0
read_files = 0 read_files = 0
files = [filename for filename in glob.glob(os.path.join(path, b'*.gbff*'))] files = [filename for filename in glob.glob(os.path.join(path, b'*.gbff*'))]
files.extend([filename for filename in glob.glob(os.path.join(path, b'*.seq*'))]) # new genbank extension
files = list(set(files))
for filename in files: for filename in files:
if read==only: if read==only:
return return