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4ba01617af
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Fixed obscure compilation bug
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2016-08-10 15:26:40 +02:00 |
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bec684d5e2
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Fixed merge conflict
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2016-08-10 15:05:37 +02:00 |
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2aaa87edcc
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1st version of obi align command and reworked functions that handle
column alignment
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2016-08-10 14:51:02 +02:00 |
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400a3f9f3d
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Merge branch 'Eric_version_for_sequence'
Conflicts:
python/obitools3/obidms/_obidmscolumn_seq.pyx
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2016-08-04 09:42:42 +02:00 |
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d1d26b9028
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Simplify the code
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2016-08-04 08:00:54 +02:00 |
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465ea81c77
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Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
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2016-08-03 10:13:47 +02:00 |
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1e6d6e32e0
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Switch to Cython version >= 0.24
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2016-08-03 10:13:10 +02:00 |
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ccc877764e
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Patch a bug in the printing of the progress bar leading to a bus error
when compiled with some C compilers and Cython >= 0.24
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2016-08-03 10:12:23 +02:00 |
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8f0462c407
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Merge branch 'master' into Eric_version_for_sequence
Conflicts:
python/obitools3/obidms/_obidmscolumn_seq.pyx
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2016-08-03 10:09:20 +02:00 |
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26b8e1f215
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Modified C API to set and get in columns: added functions to set and get
using column names instead of pointers, and changed function names
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2016-08-02 16:33:19 +02:00 |
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312f50ff0f
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Major update: Column aliases. Columns are now identified in the context
of a view by an alias that can be modified.
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2016-08-01 18:25:30 +02:00 |
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3843485a04
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Deleted deprecated function declaration that would make compilation
impossible and fixed error in documentation
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2016-07-22 16:21:02 +02:00 |
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20425a5d2b
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Deleted deprecated structure declarations
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2016-07-19 15:48:56 +02:00 |
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56e4848ebd
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The predicates associated with a view are now described in its comments
field
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2016-07-19 15:31:21 +02:00 |
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8850e40b6e
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Minor changes for better presentation
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2016-07-19 15:30:17 +02:00 |
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b89af38109
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Goes with 38718320
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2016-07-18 13:57:49 +02:00 |
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38718320f9
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First version for the association of one column to another. Closes #55
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2016-07-15 15:38:49 +02:00 |
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8ee85c3005
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A first version of predicate functions that are checked when a new view
is saved and closed
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2016-07-12 14:54:11 +02:00 |
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000b9999ad
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Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
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2016-07-03 09:22:22 +02:00 |
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aff9831c13
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Substitute fprintf call by fputs call to conform with the new ubuntu
compilation rules
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2016-07-03 09:21:56 +02:00 |
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448fa8d325
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first trial for a fasta formater
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2016-07-03 09:18:52 +02:00 |
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6af62d8124
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Change a fprintf without argument to a fputs to comply with the new
default parameter on ubuntu
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2016-07-03 08:25:06 +02:00 |
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0869b9ba3f
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Closes issue #47 by storing each view in a separate file named with the
view's name and created upon view creation.
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2016-06-30 11:41:30 +02:00 |
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ad2af0b512
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Some comments updated
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2016-06-16 11:26:54 +02:00 |
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38e603ed57
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Deleted some redundant cython code
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2016-06-10 10:34:47 +02:00 |
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f438c3d913
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OBIQUAL columns can now handle multiple elements per line
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2016-06-09 15:54:36 +02:00 |
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2a1ea3ba3f
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Setting NA values is now handled properly for OBI_SEQ, OBI_STR and
OBI_QUAL columns
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2016-06-09 14:22:36 +02:00 |
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fc3641d7ff
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Read-only AVLs are now hard-linked instead of copied when cloning an AVL
group to make it writable. Also fixed several bugs when handling AVL
groups.
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2016-06-03 19:02:46 +02:00 |
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799b942017
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Deleted old debugging print
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2016-06-03 18:57:32 +02:00 |
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6e3f5b230e
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Fixed typo in doc
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2016-06-03 18:56:45 +02:00 |
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2f57f80c63
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Fixed a bug where an unmapped variable would be read
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2016-06-03 18:55:58 +02:00 |
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2962c4d250
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Goes with previous commit
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2016-06-03 18:54:25 +02:00 |
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69bf7ec2e7
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NA value for OBI_STR and OBI_SEQ columns is now NULL
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2016-06-03 18:53:22 +02:00 |
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bac7ce7184
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Start of the implementation of the export methods
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2016-06-02 19:10:33 +02:00 |
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f186395661
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Trap potential exception generated by char* to bytes casts
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2016-05-29 21:18:20 +02:00 |
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85395dfc1a
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value returned for sequence is now bytes and no more str
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2016-05-29 13:53:32 +02:00 |
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f830389974
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Add some comment on the location of the align method.
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2016-05-29 12:58:31 +02:00 |
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2e35229357
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Add conversion checking on the value of a seq column
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2016-05-29 12:54:13 +02:00 |
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a8ed57dc6e
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few small changes
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2016-05-21 12:29:55 +02:00 |
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c3274d419c
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remove an extra debug log
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2016-05-21 12:29:08 +02:00 |
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cca0dbb46b
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Close issue #54 by adding a read1 method to the MagicKeyFile class
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2016-05-21 12:24:48 +02:00 |
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5a78157112
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increase parsing speed of the header
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2016-05-21 10:29:11 +02:00 |
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0b9a41d952
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Patch a bug about the reading of the last sequence
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2016-05-21 10:28:03 +02:00 |
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e681ca646d
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Fixed a problem with some columns being shorter in views and triggering
errors when trying to get values. Temporary fix that needs discussion
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2016-05-20 18:45:29 +02:00 |
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3b59043ea8
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Major update: New column type to store sequence qualities. Closes #41
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2016-05-20 16:45:22 +02:00 |
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ffff91e76c
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Fixed variable name that had been accidentally changed for better
clarity
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2016-05-18 13:27:41 +02:00 |
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6a8df069ad
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Indexers are now cloned if needed to modify them after they've been
closed. Obligatory indexers' names now follow the same pattern as other
indexers (columnname_version). Closes #46 and #49.
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2016-05-18 13:23:48 +02:00 |
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8ae7644945
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First version of quality handling (not working yet) and now it is
checked that a column is writable before enlarging it
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2016-05-11 16:38:14 +02:00 |
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b3c47809da
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First version of alignment functions (imported from suma* programs)
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2016-05-11 16:36:23 +02:00 |
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3567681339
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Now when a column is added to a view, if there is a line selection, all
columns in the view are cloned first
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2016-05-11 16:34:20 +02:00 |
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