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7b780ffb28
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View files now have a dynamic size to allow unlimited comments size
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2016-08-18 17:57:03 +02:00 |
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e4129610cf
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Quality columns are now optional in NUC_SEQS views + minor fixes
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2016-08-16 15:17:26 +02:00 |
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cf839522e7
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Minor update and fix to obi grep command
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2016-08-12 17:45:44 +02:00 |
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10b22f79da
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The cython subclass is now correctly chosen when cloning a view
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2016-08-12 17:39:19 +02:00 |
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ad8e10f2d1
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Reworked a bit alignment API
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2016-08-12 15:56:07 +02:00 |
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92cad61417
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Fixed bug when closing views with no associated predicate
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2016-08-12 15:52:38 +02:00 |
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64a745ce0b
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First very basic version of obi grep command
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2016-08-11 17:32:08 +02:00 |
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2d8ac2b035
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Fixed bug when creating an OBI_IDX column
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2016-08-11 17:30:32 +02:00 |
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5b7917bb5a
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Fixed bug when writing predicates in view file
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2016-08-11 17:30:09 +02:00 |
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d3c58780a0
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Added __len__ function do OBIViews that returns the line count
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2016-08-10 17:20:23 +02:00 |
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029d395da1
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Added __iter__ function to OBIView lines
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2016-08-10 17:08:22 +02:00 |
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bea02cc7a5
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Added (temporary?) check for the type of quality strings because the
import now seems to return them with bytes type
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2016-08-10 16:25:45 +02:00 |
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4ba01617af
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Fixed obscure compilation bug
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2016-08-10 15:26:40 +02:00 |
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bec684d5e2
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Fixed merge conflict
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2016-08-10 15:05:37 +02:00 |
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2aaa87edcc
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1st version of obi align command and reworked functions that handle
column alignment
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2016-08-10 14:51:02 +02:00 |
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400a3f9f3d
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Merge branch 'Eric_version_for_sequence'
Conflicts:
python/obitools3/obidms/_obidmscolumn_seq.pyx
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2016-08-04 09:42:42 +02:00 |
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d1d26b9028
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Simplify the code
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2016-08-04 08:00:54 +02:00 |
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465ea81c77
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Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
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2016-08-03 10:13:47 +02:00 |
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1e6d6e32e0
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Switch to Cython version >= 0.24
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2016-08-03 10:13:10 +02:00 |
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ccc877764e
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Patch a bug in the printing of the progress bar leading to a bus error
when compiled with some C compilers and Cython >= 0.24
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2016-08-03 10:12:23 +02:00 |
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8f0462c407
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Merge branch 'master' into Eric_version_for_sequence
Conflicts:
python/obitools3/obidms/_obidmscolumn_seq.pyx
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2016-08-03 10:09:20 +02:00 |
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26b8e1f215
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Modified C API to set and get in columns: added functions to set and get
using column names instead of pointers, and changed function names
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2016-08-02 16:33:19 +02:00 |
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312f50ff0f
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Major update: Column aliases. Columns are now identified in the context
of a view by an alias that can be modified.
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2016-08-01 18:25:30 +02:00 |
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3843485a04
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Deleted deprecated function declaration that would make compilation
impossible and fixed error in documentation
|
2016-07-22 16:21:02 +02:00 |
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20425a5d2b
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Deleted deprecated structure declarations
|
2016-07-19 15:48:56 +02:00 |
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56e4848ebd
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The predicates associated with a view are now described in its comments
field
|
2016-07-19 15:31:21 +02:00 |
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8850e40b6e
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Minor changes for better presentation
|
2016-07-19 15:30:17 +02:00 |
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b89af38109
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Goes with 38718320
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2016-07-18 13:57:49 +02:00 |
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38718320f9
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First version for the association of one column to another. Closes #55
|
2016-07-15 15:38:49 +02:00 |
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8ee85c3005
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A first version of predicate functions that are checked when a new view
is saved and closed
|
2016-07-12 14:54:11 +02:00 |
|
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000b9999ad
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Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
|
2016-07-03 09:22:22 +02:00 |
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aff9831c13
|
Substitute fprintf call by fputs call to conform with the new ubuntu
compilation rules
|
2016-07-03 09:21:56 +02:00 |
|
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448fa8d325
|
first trial for a fasta formater
|
2016-07-03 09:18:52 +02:00 |
|
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6af62d8124
|
Change a fprintf without argument to a fputs to comply with the new
default parameter on ubuntu
|
2016-07-03 08:25:06 +02:00 |
|
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0869b9ba3f
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Closes issue #47 by storing each view in a separate file named with the
view's name and created upon view creation.
|
2016-06-30 11:41:30 +02:00 |
|
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ad2af0b512
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Some comments updated
|
2016-06-16 11:26:54 +02:00 |
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38e603ed57
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Deleted some redundant cython code
|
2016-06-10 10:34:47 +02:00 |
|
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f438c3d913
|
OBIQUAL columns can now handle multiple elements per line
|
2016-06-09 15:54:36 +02:00 |
|
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2a1ea3ba3f
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Setting NA values is now handled properly for OBI_SEQ, OBI_STR and
OBI_QUAL columns
|
2016-06-09 14:22:36 +02:00 |
|
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fc3641d7ff
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Read-only AVLs are now hard-linked instead of copied when cloning an AVL
group to make it writable. Also fixed several bugs when handling AVL
groups.
|
2016-06-03 19:02:46 +02:00 |
|
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799b942017
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Deleted old debugging print
|
2016-06-03 18:57:32 +02:00 |
|
|
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6e3f5b230e
|
Fixed typo in doc
|
2016-06-03 18:56:45 +02:00 |
|
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2f57f80c63
|
Fixed a bug where an unmapped variable would be read
|
2016-06-03 18:55:58 +02:00 |
|
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2962c4d250
|
Goes with previous commit
|
2016-06-03 18:54:25 +02:00 |
|
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69bf7ec2e7
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NA value for OBI_STR and OBI_SEQ columns is now NULL
|
2016-06-03 18:53:22 +02:00 |
|
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bac7ce7184
|
Start of the implementation of the export methods
|
2016-06-02 19:10:33 +02:00 |
|
|
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f186395661
|
Trap potential exception generated by char* to bytes casts
|
2016-05-29 21:18:20 +02:00 |
|
|
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85395dfc1a
|
value returned for sequence is now bytes and no more str
|
2016-05-29 13:53:32 +02:00 |
|
|
|
f830389974
|
Add some comment on the location of the align method.
|
2016-05-29 12:58:31 +02:00 |
|
|
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2e35229357
|
Add conversion checking on the value of a seq column
|
2016-05-29 12:54:13 +02:00 |
|
