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Update Wolf tutorial with the OBITools3

Celine Mercier
2022-03-07 05:00:46 +01:00
parent f4e8a2d0a6
commit 64d691a399
1 changed files with 3 additions and 2 deletions
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Wolf-tutorial-with-the-OBITools3.md

@ -112,14 +112,15 @@ Otherwise, to build the database yourself from the start:
mkdir EMBL
cd EMBL
wget -nH --cut-dirs=5 -A rel_std_*.dat.gz -R rel_std_hum_*.dat.gz,rel_std_env_*.dat.gz -m ftp://ftp.ebi.ac.uk/pub/databases/embl/release/std/
wget -nH --cut-dirs=6 -A 'STD_*.dat.gz' -R 'STD_HUM*.dat.gz','STD_ENV*.dat.gz' -m -np ftp://ftp.ebi.ac.uk/pub/databases/ena/sequence/snapshot_latest/std/
cd ..
2. Import the sequences in the DMS:
obi import --embl EMBL wolf/embl_refs
For EMBL files, you can give the path to a directory with several EMBL files.
For EMBL files, you can give the path to a directory with several EMBL files. Same with GenBank files.
**Note:** The reference database can be built in another DMS.