update release note and the install script

Former-commit-id: 11db481e26f3f5099b9ea8b2d66658d47f2992b1
This commit is contained in:
2023-06-07 17:54:02 +02:00
parent d46f6b06c5
commit 1cedc0765d
2 changed files with 17 additions and 4 deletions

View File

@ -2,11 +2,24 @@
## Latest changes
### Bugs
- Patch a bug in the install script for correctly follow download redirection.
### Enhancement
- Comparison algorithms in `obitag` and `obirefidx` take more advantage of the data structure to limit the number of alignments
actually computed. This increase a bit the speed of both the software. `obirefidx` is nevertheless still too slow
compared to my expectation.
### New feature
- In `obiannotate` adds the **--set-identifier** option to edit the sequence identifier
- In `obitag` adds the **--save-db** option allowing at the end of the run of `obitag` to save a
modified version of the reference database containing the computed index. This allows next
time using this partially indexed reference library to accelerate the taxonomic annotations.
- Adding of the function `gsub` to the expression language for substituting string pattern.
## May 2nd, 2023. Release 4.0.3
### New features

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@ -63,7 +63,7 @@ mkdir -p "${INSTALL_DIR}/bin" 2> /dev/null \
|| (echo "Please enter your password for installing obitools in ${INSTALL_DIR}" 1>&2
sudo mkdir -p "${INSTALL_DIR}/bin")
if [[ ! "${INSTALL_DIR}/bin" || ! -d "${INSTALL_DIR}/bin" ]]; then
if [[ ! -d "${INSTALL_DIR}/bin" ]]; then
echo "Could not create ${INSTALL_DIR}/bin directory for installing obitools" 1>&2
exit 1
fi
@ -109,7 +109,7 @@ export PATH
curl -L "$OBIURL4" \
| tar zxf -
cd obitools4-master
cd obitools4-master || exit
if [[ -z "$OBITOOLS_PREFIX" ]] ; then
make
@ -121,7 +121,7 @@ fi
|| (echo "Please enter your password for installing obitools in ${INSTALL_DIR}"
sudo cp build/* "${INSTALL_DIR}/bin")
popd
popd || exit
# rm -rf "$WORK_DIR"
rm -rf "$WORK_DIR"