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https://github.com/metabarcoding/obitools4.git
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update release note and the install script
Former-commit-id: 11db481e26f3f5099b9ea8b2d66658d47f2992b1
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@ -2,11 +2,24 @@
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## Latest changes
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### Bugs
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- Patch a bug in the install script for correctly follow download redirection.
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### Enhancement
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- Comparison algorithms in `obitag` and `obirefidx` take more advantage of the data structure to limit the number of alignments
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actually computed. This increase a bit the speed of both the software. `obirefidx` is nevertheless still too slow
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compared to my expectation.
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### New feature
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- In `obiannotate` adds the **--set-identifier** option to edit the sequence identifier
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- In `obitag` adds the **--save-db** option allowing at the end of the run of `obitag` to save a
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modified version of the reference database containing the computed index. This allows next
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time using this partially indexed reference library to accelerate the taxonomic annotations.
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- Adding of the function `gsub` to the expression language for substituting string pattern.
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## May 2nd, 2023. Release 4.0.3
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### New features
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@ -63,7 +63,7 @@ mkdir -p "${INSTALL_DIR}/bin" 2> /dev/null \
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|| (echo "Please enter your password for installing obitools in ${INSTALL_DIR}" 1>&2
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sudo mkdir -p "${INSTALL_DIR}/bin")
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if [[ ! "${INSTALL_DIR}/bin" || ! -d "${INSTALL_DIR}/bin" ]]; then
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if [[ ! -d "${INSTALL_DIR}/bin" ]]; then
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echo "Could not create ${INSTALL_DIR}/bin directory for installing obitools" 1>&2
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exit 1
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fi
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@ -109,7 +109,7 @@ export PATH
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curl -L "$OBIURL4" \
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| tar zxf -
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cd obitools4-master
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cd obitools4-master || exit
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if [[ -z "$OBITOOLS_PREFIX" ]] ; then
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make
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@ -121,7 +121,7 @@ fi
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|| (echo "Please enter your password for installing obitools in ${INSTALL_DIR}"
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sudo cp build/* "${INSTALL_DIR}/bin")
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popd
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popd || exit
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# rm -rf "$WORK_DIR"
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rm -rf "$WORK_DIR"
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