update the compress option name

This commit is contained in:
Eric Coissac
2025-03-11 17:14:40 +01:00
parent f21f51ae62
commit 62e5a93492
4 changed files with 15 additions and 7 deletions

View File

@ -10,6 +10,14 @@
- Options **--fasta** or **--fastq** usable to specify input format were ignored.
They are now correctly considered
- The `obiannotate` command were crashing when a selection option was used but
no editing option.
- The `--fail-on-taxonomy` led to an error on merged taxa even when the
`--update-taxid` option was used.
- The `--compressed` option was not correctly named. It was renamed to `--compress`
### Enhancement

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@ -1,15 +1,15 @@
package obidefault
var __compressed__ = false
var __compress__ = false
func CompressOutput() bool {
return __compressed__
return __compress__
}
func SetCompressOutput(b bool) {
__compressed__ = b
__compress__ = b
}
func CompressedPtr() *bool {
return &__compressed__
func CompressOutputPtr() *bool {
return &__compress__
}

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@ -8,7 +8,7 @@ import (
// corresponds to the last commit, and not the one when the file will be
// commited
var _Commit = "3b5d4ba"
var _Commit = "f21f51a"
var _Version = "Release 4.4.0"
// Version returns the version of the obitools package.

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@ -80,7 +80,7 @@ func OutputModeOptionSet(options *getoptions.GetOpt, compressed bool) {
options.Description("Disable the progress bar printing"))
if compressed {
options.BoolVar(obidefault.CompressedPtr(), "compressed", obidefault.CompressOutput(),
options.BoolVar(obidefault.CompressOutputPtr(), "compress", obidefault.CompressOutput(),
options.Alias("Z"),
options.Description("Compress all the result using gzip"))