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Remove an old test file out of interest

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This commit is contained in:
Eric Coissac
2022-01-14 14:59:33 +01:00
parent 236c7277e0
commit bb63a424e9
1 changed files with 0 additions and 58 deletions
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58
cmd/test/test_test.go
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@ -1,58 +0,0 @@
package main_test
import (
"fmt"
"testing"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiannot"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiformats"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
)
func TestParseOBIFasta(t *testing.T) {
f := "/Users/coissac/travail/Adeline/Soumission_data/Zonation/euka03/euka03.ecotag.fasta.gz"
var nseq, nread int
nseq = 0
nread = 0
fs := obiformats.ReaderFromIlluminaFile(f)
fmt.Println(f)
for i := range obiannot.ExtractHeaderChannel(fs, fastseq.ParseOBIHeader) {
for _, s := range i {
nseq++
nread += s.Count()
}
}
fmt.Println(nseq, nread)
}
func ExtractHeaderChannel(fs fastseq.IFastSeq, sequence func(sequence obiseq.Sequence)) {
panic("unimplemented")
}
// Performance test of an ADEXP message parsing
func BenchmarkParseOBIFasta(t *testing.B) {
f := "/Users/coissac/travail/Adeline/Soumission_data/Zonation/euka03/euka03.ecotag.fasta.gz"
var nseq, nread int
nseq = 0
nread = 0
fs := fastseq.ReaderFromIlluminaFile(f)
fmt.Println(f)
for i := range obiannot.ExtractHeaderChannel(fs, fastseq.ParseOBIHeader) {
for _, s := range i {
nseq++
nread += s.Count()
}
}
fmt.Println(nseq, nread)
}