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change default of output options and add the actual printing of the column sequence

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Former-commit-id: bc3adf7ddecca3683def980ffc8a8bd63410ab3a
This commit is contained in:
Eric Coissac
2023-06-07 17:47:06 +02:00
parent 7f08f58336
commit e29dacc1ba
2 changed files with 4 additions and 3 deletions
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1
pkg/obitools/obicsv/obicsv.go
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@ -36,6 +36,7 @@ func CLIWriteCSV(iterator obiiter.IBioSequence,
obiformats.CSVTaxon(CLIPrintTaxon()),
obiformats.CSVDefinition(CLIPrintDefinition()),
obiformats.CSVKeys(CLIToBeKeptAttributes()),
obiformats.CSVSequence(CLIPrintSequence()),
)
var err error

6
pkg/obitools/obicsv/options.go
View File

@ -6,11 +6,11 @@ import (
"github.com/DavidGamba/go-getoptions"
)
var _outputIds = true
var _outputIds = false
var _outputCount = false
var _outputTaxon = false
var _outputSequence = true
var _outputQuality = true
var _outputSequence = false
var _outputQuality = false
var _outputDefinition = false
var _obipairing = false
var _autoColumns = false