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7542e33010
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Several bugs dicoverd during the doc writing
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2025-04-04 16:59:27 +02:00 |
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7a9dc1ab3b
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update release notes
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2025-03-12 14:06:20 +01:00 |
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62e5a93492
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update the compress option name
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2025-03-11 17:14:40 +01:00 |
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b18c9b7ac6
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add the --raw-taxid option
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2025-03-08 09:40:06 +01:00 |
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78df7db18d
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typos
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2025-03-08 07:44:41 +01:00 |
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fc08c12ab0
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update release notes
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2025-03-08 07:42:20 +01:00 |
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996ec69bd9
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update the release notes for version 4.4.0
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2025-03-01 12:56:39 +01:00 |
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7b23314651
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Some typos
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2025-03-01 08:29:27 +01:00 |
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1e541eac4c
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Last commit version
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2025-03-01 08:24:26 +01:00 |
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51b3e83d32
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some cleaning
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2025-02-24 11:31:49 +01:00 |
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8671285d02
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add the --min-sample-count option to obiclean.
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2025-02-24 08:48:31 +01:00 |
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00f2dc2697
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Rename obifind obitaxonomy and introduce the new CSV format for taxonomy.
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2025-01-29 10:45:26 +01:00 |
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3137c1f841
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Adds the ability to read gzip-tar file for the taxonomy dump
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2025-01-24 11:47:59 +01:00 |
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ad2461a656
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some minor improvements
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2024-11-27 13:36:06 +01:00 |
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d29a56dcbf
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Changes to be committed:
modified: Release-notes.md
modified: pkg/obialign/pairedendalign.go
modified: pkg/obilua/obiseq.go
modified: pkg/obioptions/version.go
modified: pkg/obiseq/biosequence.go
modified: pkg/obitools/obipairing/pairing.go
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2024-11-27 09:56:22 +01:00 |
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05bf2bfd6c
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Add option related to agrep match on obigrep and obiannotate
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2024-09-09 16:52:13 +02:00 |
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c0c18030c8
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Adds information on the new github address
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2024-08-02 14:26:20 +02:00 |
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242f4d8f56
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Realease notes
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2024-08-02 13:50:33 +02:00 |
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1b1cd41fd3
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Add some code refactoring from the blackboard branch
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2024-08-02 12:35:46 +02:00 |
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c7ed47e110
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first version of obidemerge, obijoin and a new filter for obicleandb but to be finnished
Former-commit-id: 8a1ed26e5548c30db75644c294d478ec4d753f19
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2024-07-10 15:21:42 +02:00 |
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2d4813614b
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Update the release Notes
Former-commit-id: 5611fb13809c5cc45a515be5d62aac61e6fc51ad
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2024-06-07 09:11:06 +02:00 |
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411124d1b3
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Add automatic rules to manage version number
Former-commit-id: f4fcc1927f4169025c1d8cc88c5f3abcdc76037c
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2024-06-01 17:26:16 +02:00 |
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55ce36f329
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Update of obipcr and homogenization of logging
Former-commit-id: 46abf47c19ace5248042c02cf1f81d9f6c12eb10
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2024-05-16 15:18:30 +02:00 |
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cb35612a6c
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new --version option and qualities method in obiscript
Former-commit-id: 7b0ce2901785d5c7494dec3a7a95d1fc5dc4a52b
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2024-04-13 12:40:43 +02:00 |
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0a2ea962db
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obitag bug
Former-commit-id: e6f8750d8db74c0b175c4a93d5b58bd84f293d52
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2024-04-03 16:28:06 +02:00 |
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d68210ef94
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Tag version 4.2.0
Former-commit-id: 9315e463fcf9c654ff34738d0fb93c94538600a1
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2024-04-03 12:57:00 +02:00 |
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bf41d16e67
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Patch a bug in obitag on the identification of the best match
Former-commit-id: e551b3b83e79a517dd5409ea8112fb005c39c2ee
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2024-04-03 12:30:40 +02:00 |
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e25c3b7365
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Bug in the json parsing
Former-commit-id: e652b04b9fa7e11124eb5930c7bec4613c808758
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2024-03-19 13:50:13 +01:00 |
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0f3871d203
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Change the API of workers
Former-commit-id: 9b07306edd8cf28266f86f95823948fa99d39ea9
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2024-03-02 16:03:46 -04:00 |
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1542ce4c63
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Work on EMBL and Genbank parser efficienct
Former-commit-id: 309cc9ce4eea4c8085d7d4451a66a81710532f07
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2024-02-20 13:23:07 +01:00 |
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c1d9bea6bb
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Release 4.1.2
Former-commit-id: 68a0f5c50b7a33e31b76c0c0994e17dc8321963b
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2024-02-16 18:05:08 +01:00 |
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23758b00f6
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Patch a bug in the embl reader and adds some doc
Former-commit-id: 9b5f75fb14bcc3043da1647055279987a295d271
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2024-01-31 15:43:02 +01:00 |
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e3938c7ba0
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Update release date
Former-commit-id: 773ca2e8938c10cdf24911598d56708a5a80fbc2
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2023-12-20 10:06:17 +01:00 |
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1a0ca8c847
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Tags release 4.1.1
Former-commit-id: 31c11305f9301615bdc1c9dfd0c7270777b6a096
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2023-12-20 10:02:40 +01:00 |
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2caaa62485
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Implements the kmeans++ algo to select the landmarks in the geometric method
Former-commit-id: 732404a0dc6d7276e4e479dd2481aa4bd42d4ce5
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2023-12-11 16:07:03 +01:00 |
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03bef6461d
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Complement to the documentation
Former-commit-id: 89952a6f3bb261a6aaec24430906e635914ffce4
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2023-12-04 13:16:34 +01:00 |
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72ad84c2d4
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remove a forgotten debug log
Former-commit-id: 9fe06483b0dabc9d618f4f1d752ae9e472a07904
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2023-11-25 14:04:22 +01:00 |
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db6de58548
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Patch bug in ngsfilter reader
Former-commit-id: 77a1c39bf9c023bf4a3f58167e1e8a4d5d82e7c9
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2023-11-25 13:55:43 +01:00 |
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5d24522aa6
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update the release notes
Former-commit-id: 71ffb326302e5f108a52a41853e1c7dc6ee76136
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2023-11-24 17:45:13 +01:00 |
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72e5855ee9
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Adds changes
Former-commit-id: 85e9faa305c918618cef5d8ea5e2eca8956213d4
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2023-11-22 14:58:21 +01:00 |
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9384876416
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Push version 4.1.0
Former-commit-id: 87a36bc61d99557fa4539ff44417ae1cdd2b2317
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2023-11-16 07:51:43 +01:00 |
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4017e213e9
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release note
Former-commit-id: 55acaae2d107ab19dcd5b1765ac866030e9ea143
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2023-11-10 00:45:11 +01:00 |
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dedf125f6e
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Patch a bug in Subsequence and adds few unit tests.
Former-commit-id: caddc9ad6523e4ef02899bfe83cc8681ef674383
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2023-11-08 10:16:34 +02:00 |
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8f96517f3c
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small changes
Former-commit-id: 1fee30445f03ff627dab1c335e75c3f278621f6e
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2023-11-07 21:20:45 +02:00 |
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aa0443e484
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correction to release notes
Former-commit-id: 424819230f26bccd6f5ef26684f50e9ff477a7de
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2023-11-07 12:20:40 +02:00 |
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185b974d13
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Adds a JSON output format
Former-commit-id: 26f07460772c0f735bf705d473f892878d3e57f0
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2023-11-07 11:56:49 +02:00 |
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61c30f9b6a
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Patch rev complement and first implementation of --auto in obicsv
Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
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2023-11-07 09:37:07 +02:00 |
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ddf0f2cede
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Add the -D (--delta) option to obipcr
Former-commit-id: 753079807faaddb23e03fd6350125bfa67f98c7f
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2023-10-13 17:04:10 +02:00 |
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c2533667b2
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Tag a Fatal bug release 4.0.5
Former-commit-id: 10b27c6d3867756d3159ef22eefd75db3fab84d0
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2023-08-29 18:32:00 +02:00 |
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45ea4dacf7
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Every small changes to include into Release 4.0.4
Former-commit-id: b2a48c5b5c471f072785e02d4bb0f149a09cdf6f
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2023-08-27 17:22:51 +02:00 |
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