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3d06978808
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a functional new version of obifind
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2024-11-24 19:33:24 +01:00 |
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36327c79c8
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Changes to be committed:
modified: .gitignore
new file: pkg/obitax/default_taxonomy.go
modified: pkg/obitax/taxon.go
modified: pkg/obitax/taxonnode.go
modified: pkg/obitax/taxonomy.go
modified: pkg/obitax/taxonset.go
modified: pkg/obitax/taxonslice.go
modified: pkg/obitools/obifind/iterator.go
modified: pkg/obitools/obifind/options.go
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2024-11-16 10:01:49 +01:00 |
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f3d8707c08
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Add default taxonomy
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2024-11-16 10:01:07 +01:00 |
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7633fc4d23
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update documentation
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2024-11-16 06:00:27 +01:00 |
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f5d79d0bc4
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update api documentation
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2024-11-16 05:59:41 +01:00 |
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03f4e88a17
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Fisrt functional version
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2024-11-14 19:10:23 +01:00 |
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9471fedfa1
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Fisrt step in the obitax rewriting
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2024-11-08 09:48:16 +01:00 |
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422f11cceb
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Changes to be committed:
modified: pkg/obitools/obitagpcr/pcrtag.go
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2024-10-29 16:53:10 +01:00 |
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fefc360f80
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Changes to be committed:
modified: pkg/obioptions/version.go
modified: pkg/obitools/obitagpcr/pcrtag.go
modified: pkg/obiutils/abs.go
new file: pkg/obiutils/abs_test.go
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2024-10-28 21:51:21 +01:00 |
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3e00d39d47
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In obimultiplex, patch a bug when no tag are associated to a primer.
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2024-10-22 14:12:20 +02:00 |
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9e8a7fd9be
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Patch a bug in fastq reader
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2024-10-20 16:07:43 +02:00 |
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74280e4704
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Merge branch 'no-pools'
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2024-09-24 16:38:23 +02:00 |
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7255c71576
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commit version
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2024-09-24 16:36:59 +02:00 |
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241f2286f2
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remove the slice pool management
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2024-09-24 16:31:30 +02:00 |
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b37fc39ead
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switch to go version 1.23.1
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2024-09-24 15:55:01 +02:00 |
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2b4a633c30
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EndGapFree alignments
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2024-09-24 15:52:12 +02:00 |
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05bf2bfd6c
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Add option related to agrep match on obigrep and obiannotate
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2024-09-09 16:52:13 +02:00 |
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65ae82622e
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correction of several small bugs
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2024-09-03 06:08:07 -03:00 |
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373464cb06
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On development genome skim tools
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2024-08-30 11:17:33 +02:00 |
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cd330db672
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Add option to obimicrosat to control microsat length and orientation
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2024-08-30 11:16:43 +02:00 |
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31bfc88eb9
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Patch a bug on writing to stdout, and add clearer error on openning data files
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2024-08-13 09:45:28 +02:00 |
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bdb96dda94
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Adds the obimicrosat command
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2024-08-05 15:31:20 +02:00 |
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3f57935328
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Adjust the size of the genbank and embl buffer size
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2024-08-05 11:32:37 +02:00 |
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886b5d9a96
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Optimize memory for readers and writers
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2024-08-05 10:48:28 +02:00 |
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f83032e643
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Tag version
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2024-08-02 14:30:53 +02:00 |
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c0c18030c8
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Adds information on the new github address
Release_4.3.0
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2024-08-02 14:26:20 +02:00 |
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242f4d8f56
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Realease notes
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2024-08-02 13:50:33 +02:00 |
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1b1cd41fd3
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Add some code refactoring from the blackboard branch
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2024-08-02 12:35:46 +02:00 |
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bc1aaaf7d9
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New install script updated for github
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2024-07-29 14:35:21 +02:00 |
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2247c3bc0a
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obitag xprize version
Former-commit-id: 2c47d88724102b115aac5641abccb880dfbec64d
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2024-07-25 18:11:11 -04:00 |
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67665a6b40
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Xprize update
Former-commit-id: d38919a897961e4d40da3b844057c3fb94fdb6d7
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2024-07-25 18:09:03 -04:00 |
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4e4fac491f
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Fisrt versin of the two levels indexing
Former-commit-id: 4d86483bc120e27cb6f5d2c216596d410274fc69
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2024-07-12 15:17:48 +02:00 |
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42c5881ddc
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some cleanning on the new tools
Former-commit-id: f265a3910d2872c56af81c9b873669f2cb627781
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2024-07-11 10:46:11 +02:00 |
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c7ed47e110
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first version of obidemerge, obijoin and a new filter for obicleandb but to be finnished
Former-commit-id: 8a1ed26e5548c30db75644c294d478ec4d753f19
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2024-07-10 15:21:42 +02:00 |
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bd855c4965
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Adds CSV as an input format
Former-commit-id: a365bb6947064adc2709d66df05fa54c6fe47fad
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2024-07-03 21:04:27 +02:00 |
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5d9ac261ff
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correct an attribute name
Former-commit-id: 2bc540dc3863aef4f8745666047c2a7d94405343
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2024-07-01 17:44:18 +02:00 |
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fd663357b5
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First version of obicleandb...
Former-commit-id: e60b61d015abbf029a555b51de99b4252c50ab59
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2024-07-01 17:12:42 +02:00 |
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0187a82c5f
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Patch a bug in obimultiplex loosing sequence with primer dimer
Former-commit-id: ea14e1aa2e4670c19fe8ee7ec61565bd21cc25b0
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2024-06-30 17:42:28 +02:00 |
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154753de90
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Same bug but for fastq sequence writing only
Former-commit-id: 86d208fe66828da9943c559df80ff095b07eaf7a
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2024-06-26 18:46:47 +02:00 |
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e40d0bfbe7
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Debug fasta and fastq writer when the first sequence is hudge
Former-commit-id: d208ff838abb7e19e117067f6243298492d60f14
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2024-06-26 18:39:42 +02:00 |
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1835cb2cf3
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remove sonic which only works on AMD64
Former-commit-id: 5073957b4706b68896006ee0f7bc30e49ff72c3b
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2024-06-24 14:53:18 +02:00 |
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c1f03cb1f6
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Switch to faster json library go-json and sonic
Former-commit-id: ab9b4723f1dcf79fe5c073fff4d86f4f6969edfd
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2024-06-23 00:36:08 +02:00 |
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93f9dcb95f
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Reducing memory allocation events
Former-commit-id: c94e79ba116464504580fc397270ead154063971
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2024-06-22 22:32:31 +02:00 |
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e6b87ecd02
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Reduce memory allocation events
Former-commit-id: fbdb2afc857b02adc2593e2278d3bd838e99b0b2
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2024-06-22 21:01:53 +02:00 |
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54a138196c
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Patch a bug in fasta and fastq reading
Former-commit-id: bcaa264b4c4a7c67617eb909b199176bf09913db
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2024-06-21 14:28:57 +02:00 |
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818ce87bab
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Patch some bugs in writing files
Former-commit-id: 612868a281dc0ecf4e6c5776973735e5c71bd517
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2024-06-19 13:15:30 +02:00 |
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73996bb0b7
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Small change in consensus weight
Former-commit-id: 58bcc67044b82e4e1d9e0e52be336ae02ab248e9
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2024-06-19 09:11:59 +02:00 |
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a812fe8b72
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debug of obimultiplex
Former-commit-id: 1cf276840feb9d6135d96bd1bf63627d3085ae6e
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2024-06-18 23:38:33 +02:00 |
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44533fb61e
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Bugs in the non stric tag matching algorithm
Former-commit-id: efad98d6521322209ce22bc58fab54c7bddd19ec
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2024-06-10 21:19:26 +02:00 |
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2d4813614b
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Update the release Notes
Former-commit-id: 5611fb13809c5cc45a515be5d62aac61e6fc51ad
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2024-06-07 09:11:06 +02:00 |
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