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dbf69b7da5
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Patch a bug in obiseq.GetSlice
Former-commit-id: ab1a49c3d9bf19585e36842ecc15fa17afbcbf57
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2023-04-07 17:44:11 +02:00 |
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74babcec55
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adds the contains function to the language
Former-commit-id: 5fb3629b56aa0180c388333e4bfbbd199edf4cf2
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2023-04-07 16:54:57 +02:00 |
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d70bb45f3f
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Small change in parallelisation tuning
Former-commit-id: 3fe2495b7fd86a0ba47dd87907323a457bae481a
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2023-04-05 14:15:47 +02:00 |
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2e7fc9a589
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Release 4.0.2
Former-commit-id: e516cce018691172afae26147282b4b9702f44c2
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2023-03-31 15:56:37 +02:00 |
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3f69fa41d6
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Patch a bug for multiple amplicon per sequence.
Former-commit-id: b252d2de8e1a85d65c2951aa1958ee038e35741d
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2023-03-31 15:10:25 +02:00 |
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84b3e4d097
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Reduce memomry inprint of obipcr
Former-commit-id: bd25be2d454f083c729346a828e27f07ad1a216e
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2023-03-31 10:53:53 +02:00 |
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2c9bca5c8a
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realease-notes
Former-commit-id: 0f8e6959e3c8dea279b76bf6668b743151a9ada7
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2023-03-29 11:16:25 +07:00 |
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e7b9ba3f30
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Limit allocation during genbank parsing
Former-commit-id: eee3c1fa7ffb79943109ee32dbf21e78bf11b14f
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2023-03-28 22:42:58 +07:00 |
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446ba06c63
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edited .gitignore
Former-commit-id: 7090da08a2acd8d73d3c9e3aced387862bcc9822
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2023-03-28 21:31:31 +07:00 |
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0746c95f4f
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Update the package dependencies
Former-commit-id: e3fecfd65ec03f3a354338f16c52c130ea25c7f9
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2023-03-28 21:30:25 +07:00 |
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4bf041be62
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Add some option to the obiconsensus command
Former-commit-id: cf30a404a4943e4527106c977b01712ef454e028
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2023-03-28 21:23:27 +07:00 |
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e863dc456a
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Add an option --pprof
Former-commit-id: 3ca1280e8daddbf1075e3189f9851211ce8882ae
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2023-03-28 20:07:26 +07:00 |
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988ae79989
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Optimize memory allocation of the apat algorithms
Former-commit-id: 5010c5a666b322715b3b81c1078d325e1f647ede
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2023-03-28 19:37:05 +07:00 |
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21819cd41e
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Add some geometry data to the GML edges
Former-commit-id: 81022c8b6916819e5351026ebabe9641856cc06d
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2023-03-28 11:43:46 +07:00 |
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bc82422bc5
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Reduce redundante call to bytes.ToLower and substitute the last call by an home made version doing the conversion in place
Former-commit-id: d9ea22f649d97be352f8dbb37acc1495df830118
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2023-03-28 11:43:04 +07:00 |
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e8a8f746d3
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few bug in the graph algorithm
Former-commit-id: b61bdd9f671e2f5e90d32c1beac1ed84efa5e05c
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2023-03-27 22:43:45 +07:00 |
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245230ae12
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A small correction
Former-commit-id: 2616ea6bc0e288312326bfb2542e24da22876965
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2023-03-27 19:51:38 +07:00 |
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a33e471b39
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First attempt for obiconsensus... The graph traversing algorithm is too simple
Former-commit-id: 0456e6c7fd55d6d0fcf9856c40386b976b912cba
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2023-03-27 19:51:10 +07:00 |
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d5e84ec676
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rename goutils to obiutils
Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
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2023-03-24 10:25:12 +07:00 |
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42aae88520
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complete the correction related to the tag detection
Former-commit-id: 98326fb0f27788de672cdbd686b32b4dc2615038
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2023-03-23 11:52:08 +07:00 |
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57474214e7
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Patch excessive log in obimultiplex and an error in detecting the tag.
Former-commit-id: e6f427ac743cae373247a15bf49b0a27273b2569
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2023-03-23 11:40:24 +07:00 |
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98eac2360c
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adds a rule to update packages and push the corresponding updates module files
Former-commit-id: 1ffa805e74571f9d970dcb185f187dd586c1a190
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2023-03-21 22:02:18 +07:00 |
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7ed567fbad
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Make the --help or -h options working when mandatory options are declared
Former-commit-id: db502ff81dcf20449d126978fcebf890edb814ae
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2023-03-21 22:01:20 +07:00 |
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d09011fac2
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Finalyse the obimultiplex with indels
Former-commit-id: cef0ac39dac0e02d16d4bd321966a0f8a67f2c85
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2023-03-21 22:01:02 +07:00 |
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27d6c60e25
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Add the possibility to look for patterns allowing indels.
Former-commit-id: 0599c2b0ad16df086dbdb08e491503870d8904be
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2023-03-20 15:28:24 +07:00 |
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5fbe52368c
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Patch the empty batch bug
Former-commit-id: fcee04b58f2c4a0bf2c27792f991391c0b6ce78e
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2023-03-07 20:16:06 +07:00 |
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1e7756ec91
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Add comment on release notes
Former-commit-id: 79bc0a68e46c92cfac60d1cf25604a1bcba0ba34
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2023-03-07 17:36:35 +07:00 |
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9a48614a9b
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Merge branch 'master' of git.metabarcoding.org:obitools/obitools4/obitools4
Former-commit-id: 45c52be778d3d5c61db438c18c38a85171be86cd
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2023-03-07 17:34:34 +07:00 |
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b3922c3896
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Produce less weird crash on non existing files
Former-commit-id: 74bb27bd53c685be530632994bd2ba24c1f362e1
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2023-03-07 17:34:25 +07:00 |
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42cf8cea73
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Update README.md
Former-commit-id: c2d9f79cceb8f059f65a417bea5041fc2abc362b
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2023-03-07 05:50:19 +01:00 |
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7b4249b775
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Update README.md
Former-commit-id: 544600322dd3c4465bf02d99ea76c802529b9aed
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2023-03-07 05:48:50 +01:00 |
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fbfed52508
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Tag realease 4.0.1 in release notes
Former-commit-id: 55d009baf1b975c2da397a93406d132c8a52cdd6
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2023-03-07 11:15:06 +07:00 |
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bb0282b6a1
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Progress on the development
Former-commit-id: a8aa6fd60480d4453838d6846a08c84dd5a2f1d9
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2023-03-07 11:13:25 +07:00 |
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d4b185b716
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Adds some new dependencies
Former-commit-id: 2f31ea6f852651e1ffca1d9ce78b17bddd26f2bb
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2023-03-07 11:12:39 +07:00 |
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d88de15cdc
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Refactoring codes for removing buffer size options. An some other changes...
Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
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2023-03-07 11:12:13 +07:00 |
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9811e440b8
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Takes into account the option parsing errors
Former-commit-id: d0b3ed0b96a72f79f887df8fbc325427e63d7a73
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2023-03-07 11:06:08 +07:00 |
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6b52dc0700
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Correct the Makefile for a default rule
Former-commit-id: 7ac32f3f9778842fecd65cdd796b81f61b7fa41f
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2023-03-02 20:48:55 +07:00 |
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b9bf88d4df
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Adds some new columns to the ratio file.
Former-commit-id: 1b2d6116622b754670e86b683077aceac2db4ce7
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2023-02-25 15:56:23 +01:00 |
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6f28d2ab68
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Patch a bug introduced by the new model for paired sequences
Former-commit-id: 7947e28ac8252b7ed46bdb9175077d412bad0aca
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2023-02-24 10:23:26 +01:00 |
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6ce3053409
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Merge branch 'master' of git.metabarcoding.org:obitools/obitools4/obitools4
Former-commit-id: 042e2300185f1b399cc19ea4d710a7cb15cb015f
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2023-02-23 23:50:57 +01:00 |
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6c5fc8f65b
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Save change in various files
Former-commit-id: 428f8ee77c584b79cc2ef45eef2902c3e0754c77
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2023-02-23 23:45:41 +01:00 |
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05323f960c
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Start writing of the man pages
Former-commit-id: 533a8a6380a5a0b66314081a5ec2aeb973ebadec
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2023-02-23 23:43:54 +01:00 |
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c94b2974fb
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Reorganization of the documentation book directory
Former-commit-id: 095acaf9c8649b0e527c6253dc79330feedac865
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2023-02-23 23:41:24 +01:00 |
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072b85e155
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change the model for representing paired reads and extend its usage to other commands
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2023-02-23 23:35:58 +01:00 |
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ebb05fcdf7
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code refactoring. Prefix function name having behaviour depending on command line option by the prefix CLI
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2023-02-23 23:32:59 +01:00 |
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0b8f35cbf6
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Update Release-notes.md
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2023-02-18 19:57:21 +01:00 |
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a0ab14c205
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Complete the documentation and add a Release note file
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2023-02-18 19:54:21 +01:00 |
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56722895e4
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Adds to every obitools the ability to save in gzip compressed files
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2023-02-18 12:06:52 +01:00 |
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1a08ad4254
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Flush the buffered io
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2023-02-18 07:23:14 +01:00 |
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3e1f88b37b
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adds the subspc function to the gval language
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2023-02-17 23:10:43 +01:00 |
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