small fixes

python/obitools3/commands/import.pyx

@@ -430,7 +430,7 @@ def run(config):
     if pb is not None:
         pb(i, force=True)
         print("", file=sys.stderr)
-    logger("info", "Imported %d entries", i)
+    logger("info", "Imported %d entries", len(view))
     
     # Save command config in View and DMS comments
     command_line = " ".join(sys.argv[1:])

python/obitools3/commands/ngsfilter.pyx

@@ -450,7 +450,7 @@ cdef tuple annotate(sequences, infos, no_tags, verbose=False):
             sequences[1] = sequences[1][reversematch[1][2]:]
             if not directmatch[0].forward:
                 sequences[1] = sequences[1].reverse_complement
-            sequences[0][REVERSE_SEQUENCE_COLUMN] = sequences[1].seq           # used by alignpairedend tool
+            sequences[0][REVERSE_SEQUENCE_COLUMN] = sequences[1].seq      # used by alignpairedend tool
             sequences[0][REVERSE_QUALITY_COLUMN] = sequences[1].quality   # used by alignpairedend tool
         else:
             sequences[0] = sequences[0][reversematch[1][2]:]