 Celine Mercier
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e8417b4f6f
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The endianness of an OBIDMS is now stored in an informations file that
is read when opening the OBIDMS.
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2015-11-16 14:37:51 +01:00 |
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Celine Mercier
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6579566c6e
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Minor changes in code to improve readability and fix C compilation
warnings
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2015-11-10 14:37:58 +01:00 |
|
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Celine Mercier
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410e2e02a0
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When retrieving the header of a column, the version number of the column
wanted can now be provided.
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2015-11-10 13:30:10 +01:00 |
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Celine Mercier
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661fe3606a
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In OBI_CHAR columns, characters are now given and retrieved as decoded
(unicode) characters.
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2015-11-10 11:24:08 +01:00 |
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Celine Mercier
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c4b7e579cf
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Comments in column headers are now working.
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2015-11-10 10:56:45 +01:00 |
|
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Celine Mercier
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0e3d6ed2d7
|
Methods __len__ (number of lines used) and __sizeof__ (total size in
bytes) implemented for columns.
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2015-11-09 15:56:20 +01:00 |
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Celine Mercier
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9b066f4327
|
Major update: obiarrays with columns containing indices referring to
character strings.
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2015-11-06 17:55:15 +01:00 |
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Celine Mercier
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456551ffeb
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obi arrays that don't work because of cython bug passing wrong pointers
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2015-11-03 14:22:00 +01:00 |
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Celine Mercier
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ecb9d97adb
|
Reorganized the code to have less functions, and the functions to get
and format the creation date of a column are now working.
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2015-10-15 15:12:45 +02:00 |
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Celine Mercier
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0eaa5aa784
|
Major changes : new cython subclasses to handle columns with multiple
elements per line in a more efficient way + now elements_names are
passed as a list + new function to recover only the header of a column
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2015-10-14 18:05:34 +02:00 |
|
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Celine Mercier
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21923e213d
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The unit tests now test for None values
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2015-10-12 18:02:40 +02:00 |
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Celine Mercier
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dbed3d9d1d
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New module for unit testing with PyUnit
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2015-10-09 15:42:57 +02:00 |
|
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Celine Mercier
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ebc9f6f512
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fixed a bug where Cython was casting doubles in floats
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2015-10-08 15:28:30 +02:00 |
|
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Celine Mercier
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2b3f03ec28
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Removed deprecated script
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2015-10-08 10:46:46 +02:00 |
|
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Celine Mercier
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b553eef781
|
Method to close a DMS is uncommented but not complete yet (columns have
to be closed separately)
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2015-10-08 10:44:13 +02:00 |
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Celine Mercier
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392f110c8d
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new functions in the OBIDMS_column class to raise NotImplementedError
exceptions and to get the creation date of a column
|
2015-10-02 13:51:26 +02:00 |
|
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Celine Mercier
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eeebbc77c3
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missing __init__ file in previous commit
|
2015-09-28 13:52:13 +02:00 |
|
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Celine Mercier
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72155c3b73
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entirely reworked cython wrapper
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2015-09-28 13:51:35 +02:00 |
|
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Celine Mercier
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9aaf2d264a
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test
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2015-09-25 11:29:17 +02:00 |
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Celine Mercier
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0951934f77
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test
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2015-09-25 11:28:23 +02:00 |
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Celine Mercier
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68b6ab3224
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working on the cython wrapper. This doesn't compile
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2015-09-24 11:32:09 +02:00 |
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Celine Mercier
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7d7dbb1bf9
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Handling of single char columns
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2015-09-18 15:49:15 +02:00 |
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Celine Mercier
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34a3717fb9
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The cython function to open a column is now a method of the OBIDMS class
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2015-09-17 11:23:50 +02:00 |
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Celine Mercier
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2698022aaf
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New OBIDMS method to list the columns of an OBIDMS
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2015-09-15 17:09:31 +02:00 |
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Celine Mercier
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90bf15186e
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Method to get a column's number of lines used
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2015-09-14 17:33:40 +02:00 |
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Celine Mercier
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5c3bc03bd2
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Added the handling of errors with the functions to get a value in a
column
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2015-09-14 17:04:29 +02:00 |
|
 coissac
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0e50fbf706
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Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
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2015-09-03 08:38:57 -04:00 |
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coissac
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f5937ec019
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Deplacement des sources de la doc...
|
2015-09-02 04:50:50 -04:00 |
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Celine Mercier
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f31d8983bb
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Columns are now enlarged if needed when setting a value
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2015-09-01 17:38:08 +02:00 |
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Celine Mercier
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3b7536c0df
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The number of lines used is updated in the header when a value is set,
and the iteration on the values of a column is done on the number of
lines used (instead of on the total line count).
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2015-08-26 17:25:15 +02:00 |
|
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Celine Mercier
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48d10ea17c
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Functions to truncate and/or close a column
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2015-08-26 17:01:54 +02:00 |
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Celine Mercier
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fdc3b96beb
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Added cython subclasses for columns with _writable or _read for each
data type. Trying to set a value on a _read subclass raises an
exception.
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2015-08-26 15:34:12 +02:00 |
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Celine Mercier
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95dbeb25a0
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Added functions to get and set values in columns using the element name
(for columns with lines made of vectors of elements), for all data types
|
2015-08-26 15:05:23 +02:00 |
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Celine Mercier
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3f81dc0173
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Changed the variable name 'nb_elements' to 'nb_lines' for better clarity
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2015-08-26 10:52:19 +02:00 |
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Celine Mercier
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611699252e
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Files and functions for columns with the data type OBIChar_t, working
but using char* (needs to be changed)
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2015-08-26 10:31:56 +02:00 |
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Celine Mercier
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9ad31fddff
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Added the possibility to clone a column, with or without its data
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2015-08-26 10:29:07 +02:00 |
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celinemercier
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eaca9c85f1
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Files and functions for OBIDMS columns with the data type OBI_BOOL
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2015-08-11 11:00:59 +02:00 |
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celinemercier
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bc2ca89088
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Basis for OBIDMS columns with the type OBI_IDX
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2015-08-10 16:30:55 +02:00 |
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celinemercier
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a5ed8f0ef0
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A basic obicount for testing purposes
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2015-08-10 16:06:05 +02:00 |
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celinemercier
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d53c16cf3e
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Functions and files for OBIDMS columns with the type OBI_FLOAT
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2015-08-10 16:04:53 +02:00 |
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celinemercier
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66f397239b
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Commented __del__ functions for now, as they contain closedir() that can
create problems
|
2015-08-03 16:15:26 +02:00 |
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celinemercier
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1e01c9059c
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functions to get data type as a character string
|
2015-08-03 11:46:21 +02:00 |
|
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celinemercier
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a6abc74500
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Cython sources modified to add the handling of OBIDMS columns with the
type OBI_INT
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2015-07-31 18:02:40 +02:00 |
|
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celinemercier
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5c674715ee
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added the idea of each line of a column corresponding to a vector, with
the added informations of the number of elements per line and the
elements' names in the column's header structure
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2015-07-20 16:08:50 +02:00 |
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celinemercier
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802f9983c2
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fixing file names in list of C files after changing 'column groups' to
'column directories'
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2015-07-20 11:13:56 +02:00 |
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Celine Mercier
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152b34b5f4
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Closes #10 : column groups stored in directories
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2015-06-23 18:35:34 +02:00 |
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Celine Mercier
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9f9c20aa4a
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new OBIDMS_column cython class
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2015-06-17 16:49:49 +02:00 |
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Celine Mercier
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73ba9fd4c3
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updated the OBIDMS class
|
2015-06-17 16:48:56 +02:00 |
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coissac
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32fd7b5a6b
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rename falsly named files *.pyx in *.pxd ;-)
|
2015-05-27 15:05:14 +02:00 |
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coissac
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9f69f76704
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Few change on the obidms package
|
2015-05-26 14:17:08 +02:00 |
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