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  • 2698022aaf New OBIDMS method to list the columns of an OBIDMS Celine Mercier 2015-09-15 17:09:31 +02:00
  • 90bf15186e Method to get a column's number of lines used Celine Mercier 2015-09-14 17:33:40 +02:00
  • 5c3bc03bd2 Added the handling of errors with the functions to get a value in a column Celine Mercier 2015-09-14 17:04:29 +02:00
  • 0e50fbf706 Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git Eric Coissac 2015-09-03 08:38:57 -04:00
  • f2231770f1 If an error occurs when cloning a column, the new cloned file is now deleted Celine Mercier 2015-09-02 13:06:21 +02:00
  • f5937ec019 Deplacement des sources de la doc... Eric Coissac 2015-09-02 04:50:50 -04:00
  • 52e3f2ce4a Columns that are cloned are now closed after cloning Celine Mercier 2015-09-02 10:36:00 +02:00
  • f0dffaff13 Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git Celine Mercier 2015-09-02 10:15:18 +02:00
  • f31d8983bb Columns are now enlarged if needed when setting a value Celine Mercier 2015-09-01 17:38:08 +02:00
  • a6395ebaf2 Transfert the distutil.ext from the org.asm project Eric Coissac 2015-08-27 16:12:19 -04:00
  • 3b7536c0df The number of lines used is updated in the header when a value is set, and the iteration on the values of a column is done on the number of lines used (instead of on the total line count). Celine Mercier 2015-08-26 17:25:15 +02:00
  • 34ade161de added an obidebug() line Celine Mercier 2015-08-26 17:05:37 +02:00
  • 48d10ea17c Functions to truncate and/or close a column Celine Mercier 2015-08-26 17:01:54 +02:00
  • fdc3b96beb Added cython subclasses for columns with _writable or _read for each data type. Trying to set a value on a _read subclass raises an exception. Celine Mercier 2015-08-26 15:34:12 +02:00
  • 95dbeb25a0 Added functions to get and set values in columns using the element name (for columns with lines made of vectors of elements), for all data types Celine Mercier 2015-08-26 15:05:23 +02:00
  • 9d91e907e5 When a column is created, its data is initialized to the NA value of the obitype Celine Mercier 2015-08-26 12:00:38 +02:00
  • 3f81dc0173 Changed the variable name 'nb_elements' to 'nb_lines' for better clarity Celine Mercier 2015-08-26 10:52:19 +02:00
  • 8ff3488926 Fix: The number of lines used is set when cloning a column with its data Celine Mercier 2015-08-26 10:38:07 +02:00
  • 611699252e Files and functions for columns with the data type OBIChar_t, working but using char* (needs to be changed) Celine Mercier 2015-08-26 10:31:56 +02:00
  • 9ad31fddff Added the possibility to clone a column, with or without its data Celine Mercier 2015-08-26 10:29:07 +02:00
  • e6d96d999a Activated the html annotated files output in setup.py celinemercier 2015-08-12 15:47:13 +02:00
  • eaca9c85f1 Files and functions for OBIDMS columns with the data type OBI_BOOL celinemercier 2015-08-11 11:00:59 +02:00
  • bc2ca89088 Basis for OBIDMS columns with the type OBI_IDX celinemercier 2015-08-10 16:30:55 +02:00
  • a5ed8f0ef0 A basic obicount for testing purposes celinemercier 2015-08-10 16:06:05 +02:00
  • 3b3267db9a Removed a useless #include celinemercier 2015-08-10 16:05:34 +02:00
  • d53c16cf3e Functions and files for OBIDMS columns with the type OBI_FLOAT celinemercier 2015-08-10 16:04:53 +02:00
  • 66f397239b Commented __del__ functions for now, as they contain closedir() that can create problems celinemercier 2015-08-03 16:15:26 +02:00
  • 1fe2e36d5d Fixed a critical bug where the elements names were not stored correctly celinemercier 2015-08-03 16:11:55 +02:00
  • ab44e32afb More efficient obi_column_set_int() and obi_column_get_int() celinemercier 2015-08-03 15:26:28 +02:00
  • 41f627091f Error handling: obidebug() with message for all errors, and removed commands closing directories when an error occurred (creating more errors). celinemercier 2015-08-03 15:10:39 +02:00
  • 1e01c9059c functions to get data type as a character string celinemercier 2015-08-03 11:46:21 +02:00
  • 5f62cd8526 C sources modified to add the handling of OBIDM columns with the type OBI_INT, and the handling of multiple types in general celinemercier 2015-07-31 18:03:48 +02:00
  • a6abc74500 Cython sources modified to add the handling of OBIDMS columns with the type OBI_INT celinemercier 2015-07-31 18:02:40 +02:00
  • 5c674715ee added the idea of each line of a column corresponding to a vector, with the added informations of the number of elements per line and the elements' names in the column's header structure celinemercier 2015-07-20 16:08:50 +02:00
  • 484fcca557 changed the private *at functions to the official ones for openat and mkdirat, but not for opendirat, as there is no official version of it. celinemercier 2015-07-20 11:38:43 +02:00
  • 802f9983c2 fixing file names in list of C files after changing 'column groups' to 'column directories' celinemercier 2015-07-20 11:13:56 +02:00
  • d26abc438d fixing an 'error' I had introduced to test the debugging system celinemercier 2015-07-20 11:12:48 +02:00
  • 2162bf4272 obidebug.h for debugging tools Celine Mercier 2015-06-26 17:56:15 +02:00
  • c454f9612e changed 'column groups' to be called 'column directories' for now. Celine Mercier 2015-06-26 17:53:03 +02:00
  • 71cd59f775 close file descriptors that don't refer to a directory (as those can not be reopened) Celine Mercier 2015-06-24 13:53:12 +02:00
  • 719ef61461 changed file names Celine Mercier 2015-06-23 18:36:20 +02:00
  • 152b34b5f4 Closes #10 : column groups stored in directories Celine Mercier 2015-06-23 18:35:34 +02:00
  • 61b6c3ce83 Added OBI errnos but work in progress Celine Mercier 2015-06-23 17:56:21 +02:00
  • 0a78a786c1 fixed replacement *at functions and made get_full_path() function public Celine Mercier 2015-06-23 17:55:00 +02:00
  • e6e68786f7 private *at functions (openat, mkdirat, opendirat, closedirat) Celine Mercier 2015-06-18 17:19:23 +02:00
  • 58e7066b9f updated and fixed the documentation Celine Mercier 2015-06-17 17:17:54 +02:00
  • ed662077b3 fixed bugs and typos in the obidms and obidmscolumn source and header files Celine Mercier 2015-06-17 16:51:16 +02:00
  • 9f9c20aa4a new OBIDMS_column cython class Celine Mercier 2015-06-17 16:49:49 +02:00
  • 73ba9fd4c3 updated the OBIDMS class Celine Mercier 2015-06-17 16:48:56 +02:00
  • 771be89103 updated the documentation (replaced 'release files' with 'version files') Celine Mercier 2015-06-17 16:45:04 +02:00
  • f740557d96 fixes #9 : replacement function for openat(). Celine Mercier 2015-06-17 14:55:05 +02:00
  • aff74c72dd updated the documentation Celine Mercier 2015-06-10 15:41:14 +02:00
  • 5d967f5b7b fixed typos and other minor things Celine Mercier 2015-06-10 15:19:02 +02:00
  • 9b6de9c411 Attempt at defining some naming conventions. Celine Mercier 2015-05-28 17:54:11 +02:00
  • 27e246e709 updated the documentation Celine Mercier 2015-05-28 17:03:50 +02:00
  • ff64d1b2e9 deleting a useless file Celine Mercier 2015-05-28 16:35:43 +02:00
  • 235a81a534 deleting test data file Celine Mercier 2015-05-28 16:35:03 +02:00
  • 4759e1cf54 deleting the Breathe sources Celine Mercier 2015-05-28 16:34:24 +02:00
  • f4a123cd17 updated the documentation with the special values, and the idea of column directories and column group directories. Celine Mercier 2015-05-28 16:33:45 +02:00
  • 32fd7b5a6b rename falsly named files *.pyx in *.pxd ;-) eric-prototype Eric Coissac 2015-05-27 15:05:14 +02:00
  • d1324618b8 Makes few cleanning and adds an obi_dms C constructor Eric Coissac 2015-05-26 21:36:55 +02:00
  • 9f69f76704 Few change on the obidms package Eric Coissac 2015-05-26 14:17:08 +02:00
  • 25da08f42c Patch few bugs in obidistutils Eric Coissac 2015-05-26 14:15:06 +02:00
  • 50c6040466 description of the obitools3 package for the python installer Eric Coissac 2015-05-26 10:39:28 +02:00
  • 6248160eeb C Syntax error patches Eric Coissac 2015-05-26 10:38:56 +02:00
  • 30ddb32dfe first skeleton of the obitools3 package Eric Coissac 2015-05-26 10:37:26 +02:00
  • 5948858a72 Patch few bugs in distutils.ext. This version seems able to install at list the empty package Eric Coissac 2015-05-25 16:55:09 +02:00
  • fdfa51a8c7 A first version of the obidistutils adapted to Python3 Eric Coissac 2015-05-24 22:35:12 +02:00
  • 809e5ad56a Patch the documentation Eric Coissac 2015-05-23 16:51:56 +03:00
  • 3aec0d7b50 Add function for estimating the size of an obitype or of an array of obitype. Eric Coissac 2015-05-23 16:50:49 +03:00
  • 57db677d1f First minimal implementation of what should be the creation, opening and closing of an OBIDMS Eric Coissac 2015-05-23 16:29:06 +03:00
  • 5e3e6f93c0 Add a mecanism similar to the classical errno system for reporting error but specific to the OBITools framwork Eric Coissac 2015-05-23 14:54:48 +03:00
  • 3636672b2e Rename the two files to follow file naming conventions Eric Coissac 2015-05-23 13:18:28 +03:00
  • d5fcd52188 Add a function to test indianness of the platform Eric Coissac 2015-05-23 11:39:00 +03:00
  • 5138fe1db6 - Create a c-sandbox directory for experiences - Move the obicount tentative in the c-sandbox Eric Coissac 2015-05-23 10:41:14 +03:00
  • db4603c2d7 change for the word collection in several places Eric Coissac 2015-05-23 10:29:54 +03:00
  • 41d8453e56 Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git Eric Coissac 2015-05-23 10:23:33 +03:00
  • 76d714f10a Move UML image files in the UML directory Eric Coissac 2015-05-23 09:55:44 +03:00
  • a339905e73 restructuration of the documentation Eric Coissac 2015-05-23 03:39:56 +03:00
  • 0b031da28c A very basic obicount Celine Mercier 2015-05-22 17:54:34 +02:00
  • 2073f9f307 OBIDMSColumn file for testing Celine Mercier 2015-05-22 17:53:42 +02:00
  • f60a98a21d Updated the documentation Celine Mercier 2015-05-22 17:52:55 +02:00
  • 2395688bd3 adding Doxygen doc generation to the Sphinx Makefile Celine Mercier 2015-05-21 11:05:43 +02:00
  • 1d39dcc559 updated documentation Celine Mercier 2015-05-18 17:57:10 +02:00
  • 196140af35 included the doc from both header files in the documentation Celine Mercier 2015-05-13 11:16:50 +02:00
  • 5990da3215 first header files for OBIColumns. Celine Mercier 2015-05-13 11:06:52 +02:00
  • 6e1b92db8f Updated the doc with the idea of OBIDMS release files. Celine Mercier 2015-05-12 16:41:12 +02:00
  • 3662613551 Closes #4. Updated the doc with new naming conventions for OBIDMS column files. Celine Mercier 2015-05-12 15:17:28 +02:00
  • b0c9b295f1 An OBIDMS is also contitued by views Eric Coissac 2015-05-12 14:54:10 +02:00
  • 0b6c1f9f28 Add a .gitignore for the build directory in doc Eric Coissac 2015-05-12 14:51:38 +02:00
  • d922cceb59 Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git Celine Mercier 2015-05-12 14:29:39 +02:00
  • db8b54aad6 fixed "ULM" mistake : replaced with "UML" Celine Mercier 2015-05-12 14:25:52 +02:00
  • acea234d3a mv the doxyfile to the doc directory and change path to relative paths Eric Coissac 2015-05-12 12:47:35 +02:00
  • aece3281a0 adding Doxyfile Celine Mercier 2015-05-12 11:27:08 +02:00
  • 6dd6567231 documentation for the OBIDMS ULM Celine Mercier 2015-05-11 17:45:47 +02:00
  • c99677a6b6 adding the doxygen directories Celine Mercier 2015-05-11 17:27:03 +02:00
  • e1aa835463 fixed conf.py to put relative paths Celine Mercier 2015-05-11 17:23:43 +02:00
  • 476f30659d new version of the documentation with a part generated using doxygen and breathe Celine Mercier 2015-05-11 17:20:59 +02:00
  • 428431932f configuring the sphinx conf.py file for breathe Celine Mercier 2015-05-11 17:19:41 +02:00
  • 66296e1c06 adding the breathe files Celine Mercier 2015-05-11 17:18:23 +02:00