2698022aaf
New OBIDMS method to list the columns of an OBIDMS
Celine Mercier2015-09-15 17:09:31 +02:00
90bf15186e
Method to get a column's number of lines used
Celine Mercier2015-09-14 17:33:40 +02:00
5c3bc03bd2
Added the handling of errors with the functions to get a value in a column
Celine Mercier2015-09-14 17:04:29 +02:00
0e50fbf706
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
coissac2015-09-03 08:38:57 -04:00
f2231770f1
If an error occurs when cloning a column, the new cloned file is now deleted
Celine Mercier2015-09-02 13:06:21 +02:00
f5937ec019
Deplacement des sources de la doc...
coissac2015-09-02 04:50:50 -04:00
52e3f2ce4a
Columns that are cloned are now closed after cloning
Celine Mercier2015-09-02 10:36:00 +02:00
f0dffaff13
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
Celine Mercier2015-09-02 10:15:18 +02:00
f31d8983bb
Columns are now enlarged if needed when setting a value
Celine Mercier2015-09-01 17:38:08 +02:00
a6395ebaf2
Transfert the distutil.ext from the org.asm project
coissac2015-08-27 16:12:19 -04:00
3b7536c0df
The number of lines used is updated in the header when a value is set, and the iteration on the values of a column is done on the number of lines used (instead of on the total line count).
Celine Mercier2015-08-26 17:25:15 +02:00
fdc3b96beb
Added cython subclasses for columns with _writable or _read for each data type. Trying to set a value on a _read subclass raises an exception.
Celine Mercier2015-08-26 15:34:12 +02:00
95dbeb25a0
Added functions to get and set values in columns using the element name (for columns with lines made of vectors of elements), for all data types
Celine Mercier2015-08-26 15:05:23 +02:00
9d91e907e5
When a column is created, its data is initialized to the NA value of the obitype
Celine Mercier2015-08-26 12:00:38 +02:00
3f81dc0173
Changed the variable name 'nb_elements' to 'nb_lines' for better clarity
Celine Mercier2015-08-26 10:52:19 +02:00
8ff3488926
Fix: The number of lines used is set when cloning a column with its data
Celine Mercier2015-08-26 10:38:07 +02:00
611699252e
Files and functions for columns with the data type OBIChar_t, working but using char* (needs to be changed)
Celine Mercier2015-08-26 10:31:56 +02:00
9ad31fddff
Added the possibility to clone a column, with or without its data
Celine Mercier2015-08-26 10:29:07 +02:00
e6d96d999a
Activated the html annotated files output in setup.py
celinemercier2015-08-12 15:47:13 +02:00
eaca9c85f1
Files and functions for OBIDMS columns with the data type OBI_BOOL
celinemercier2015-08-11 11:00:59 +02:00
bc2ca89088
Basis for OBIDMS columns with the type OBI_IDX
celinemercier2015-08-10 16:30:55 +02:00
d53c16cf3e
Functions and files for OBIDMS columns with the type OBI_FLOAT
celinemercier2015-08-10 16:04:53 +02:00
66f397239b
Commented __del__ functions for now, as they contain closedir() that can create problems
celinemercier2015-08-03 16:15:26 +02:00
1fe2e36d5d
Fixed a critical bug where the elements names were not stored correctly
celinemercier2015-08-03 16:11:55 +02:00
ab44e32afb
More efficient obi_column_set_int() and obi_column_get_int()
celinemercier2015-08-03 15:26:28 +02:00
41f627091f
Error handling: obidebug() with message for all errors, and removed commands closing directories when an error occurred (creating more errors).
celinemercier2015-08-03 15:10:39 +02:00
1e01c9059c
functions to get data type as a character string
celinemercier2015-08-03 11:46:21 +02:00
5f62cd8526
C sources modified to add the handling of OBIDM columns with the type OBI_INT, and the handling of multiple types in general
celinemercier2015-07-31 18:03:48 +02:00
a6abc74500
Cython sources modified to add the handling of OBIDMS columns with the type OBI_INT
celinemercier2015-07-31 18:02:40 +02:00
5c674715ee
added the idea of each line of a column corresponding to a vector, with the added informations of the number of elements per line and the elements' names in the column's header structure
celinemercier2015-07-20 16:08:50 +02:00
484fcca557
changed the private *at functions to the official ones for openat and mkdirat, but not for opendirat, as there is no official version of it.
celinemercier2015-07-20 11:38:43 +02:00
802f9983c2
fixing file names in list of C files after changing 'column groups' to 'column directories'
celinemercier2015-07-20 11:13:56 +02:00
d26abc438d
fixing an 'error' I had introduced to test the debugging system
celinemercier2015-07-20 11:12:48 +02:00
f4a123cd17
updated the documentation with the special values, and the idea of column directories and column group directories.
Celine Mercier2015-05-28 16:33:45 +02:00
30ddb32dfe
first skeleton of the obitools3 package
coissac2015-05-26 10:37:26 +02:00
5948858a72
Patch few bugs in distutils.ext. This version seems able to install at list the empty package
coissac2015-05-25 16:55:09 +02:00
fdfa51a8c7
A first version of the obidistutils adapted to Python3
coissac2015-05-24 22:35:12 +02:00
809e5ad56a
Patch the documentation
coissac2015-05-23 16:51:56 +03:00
3aec0d7b50
Add function for estimating the size of an obitype or of an array of obitype.
coissac2015-05-23 16:50:49 +03:00
57db677d1f
First minimal implementation of what should be the creation, opening and closing of an OBIDMS
coissac2015-05-23 16:29:06 +03:00
5e3e6f93c0
Add a mecanism similar to the classical errno system for reporting error but specific to the OBITools framwork
coissac2015-05-23 14:54:48 +03:00
3636672b2e
Rename the two files to follow file naming conventions
coissac2015-05-23 13:18:28 +03:00
d5fcd52188
Add a function to test indianness of the platform
coissac2015-05-23 11:39:00 +03:00
5138fe1db6
- Create a c-sandbox directory for experiences - Move the obicount tentative in the c-sandbox
coissac2015-05-23 10:41:14 +03:00
db4603c2d7
change for the word collection in several places
coissac2015-05-23 10:29:54 +03:00
41d8453e56
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
coissac2015-05-23 10:23:33 +03:00
76d714f10a
Move UML image files in the UML directory
coissac2015-05-23 09:55:44 +03:00
a339905e73
restructuration of the documentation
coissac2015-05-23 03:39:56 +03:00
Celine Mercier
coissac