PhyloSkims/annotate
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

cds test on core and shell

Browse Source 
Former-commit-id: 9be1f2c23d00a2678489090c4f6d04ffc0124061
Former-commit-id: 823ca0890900bf6f81b158cafc46c78049fcf080
This commit is contained in:
alain viari
2015-11-13 22:41:34 +01:00
parent 405631f527
commit 6f43ede11e
11 changed files with 4 additions and 4 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
detectors/cds/test/test.db/core/Annot.lst
View File

@ -14,5 +14,3 @@ rpl23 rpl23 787 1:782_2:2_3:1_4:2 POLYEX ribosomal_protein_L23
rpl32 rpl32 474 1:474 MONEX ribosomal_protein_L32
rps15 rps15 480 1:479_2:1 POLYEX ribosomal_protein_S15
rps7 rps7 853 1:853 MONEX ribosomal_protein_S7
ycf1 ycf1 408 1:406_2:2 POLYEX hypothetical_chloroplast_RF1
ycf2 ycf2 654 1:649_2:5 POLYEX Ycf2

2
detectors/cds/test/test.db/shell/Annot.lst Normal file
View File

@ -0,0 +1,2 @@
ycf1 ycf1 408 1:406_2:2 POLYEX hypothetical_chloroplast_RF1
ycf2 ycf2 654 1:649_2:5 POLYEX Ycf2

0
detectors/cds/test/test.db/core/ycf1.fst → detectors/cds/test/test.db/shell/ycf1.fst
View File

BIN
detectors/cds/test/test.db/shell/ycf1.fst.phr Normal file
View File

Binary file not shown.

BIN
detectors/cds/test/test.db/shell/ycf1.fst.pin Normal file
View File

Binary file not shown.

BIN
detectors/cds/test/test.db/shell/ycf1.fst.psq Normal file
View File

Binary file not shown.

0
detectors/cds/test/test.db/core/ycf2.fst → detectors/cds/test/test.db/shell/ycf2.fst
View File

BIN
detectors/cds/test/test.db/shell/ycf2.fst.phr Normal file
View File

Binary file not shown.

BIN
detectors/cds/test/test.db/shell/ycf2.fst.pin Normal file
View File

Binary file not shown.

BIN
detectors/cds/test/test.db/shell/ycf2.fst.psq Normal file
View File

Binary file not shown.

4
detectors/cds/test/test.ref
View File

@ -278,7 +278,7 @@ FT /gene="ycf1"
FT /locus_tag=""
FT /product="hypothetical chloroplast RF1"
FT /inference="similar to DNA sequence:AC_000188:LyesCp019"
FT /inference="detect pass:pass1:core"
FT /inference="detect pass:pass1:shell"
FT /translation="MIFQSFLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLL
FT RALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFW
FT NNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYLFRCNNK
@ -322,7 +322,7 @@ FT /gene="ycf2"
FT /locus_tag=""
FT /product="Ycf2"
FT /inference="similar to DNA sequence:AC_000188:LyesCp004"
FT /inference="detect pass:pass1:core"
FT /inference="detect pass:pass1:shell"
FT /translation="MRGHQFKSWIFELREILREIKNSHHFLDSWTQFNSVGSFIHIFFH
FT QERFLKLFDPRIWSILLSRNSQGSPSNRYFTIKGVILFVVAVLIYRINNRNMVERKNLY
FT LIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVSLLYLPKGKKISESCFLNPKESTWVL