Change minimum length for considering a match from 1000 to 100. · 813e3958ba - annotate - Gitea: Git with a cup of tea

PhyloSkims/annotate

Change minimum length for considering a match from 1000 to 100.

Former-commit-id: 6bd827ca011ee71d83e98710edc837f56a089875
Former-commit-id: 454f080c0b163f238951541eec23b5946f914f28

This commit is contained in:

Eric Coissac

2015-11-09 17:35:59 +01:00

parent 32908c6809

commit 813e3958ba

1 changed files with 1 additions and 1 deletions

									
										2

detectors/normalize/lib/lookforIR.lib.sh
									
												View File
												
				@ -26,7 +26,7 @@ function lookForIR {

						       -query ${QUERY} \

						       -outfmt 6 \

						       -max_target_seqs 10000 | \

						  awk '($4 > 1000) && ($3>80) { \

						  awk '($4 > 100) && ($3>80) { \

						             SAME=(($7 < $8) && ($9 < $10)) || (($7 > $8) && ($9 > $10)); \

							 		 if ($7 < $8) \

							 			{print substr($2,1,3),$7,$8,SAME}  \