Check the translation for stop codon and add a pseudogene qualifier if

present.

Former-commit-id: 11b612fcdfa1fdd2a2614148b5b1772954e62e70
Former-commit-id: 02c87c99e5ece530640e521a577867e74ed1541e
This commit is contained in:
2018-11-20 15:59:57 +01:00
parent 671c12605a
commit a040adb132

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@ -181,6 +181,10 @@ function Unk(s) {
QQualifier("product", Product)
QQualifier("inference", "similar to DNA sequence:" Simil)
QQualifier("inference", "org.annot -- detect pass:" PassType ":" PassInfo)
if (match(Translat,/\*/)>0) {
QQualifier("pseudogene","unknown")
QQualifier("note","nonfunctional due to stop codon")
}
if (FrameShift==0)
QQualifier("translation", Translat)