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3589bf03eb
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Update Swissprot database
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2025-05-22 02:23:26 +02:00 |
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4b71fe8c4c
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Changes to be committed:
modified: .gitignore
new file: data/cds/sp_chlorodb/parameters.sh
deleted: data/ir/LSC_RefDB.fasta
deleted: data/ir/SSC_RefDB.fasta
modified: detectors/cds/bin/go_cds.sh
modified: detectors/normalize/lib/lookforIR.lib.sh
modified: detectors/normalize/lib/selectIR.py
modified: organnot/Dockerfile
new file: organnot/README.md
new file: organnot/dorgannot
deleted: ports/.DS_Store
deleted: src/ncbiblast/binaries/.gitignore
deleted: src/prokov/lxpack/tests/S.fasta
deleted: src/prokov/lxpack/tests/St.fasta
deleted: src/prokov/lxpack/tests/Stt.fasta
deleted: src/prokov/lxpack/tests/aS.fasta
deleted: src/prokov/lxpack/tests/aSt.fasta
deleted: src/prokov/lxpack/tests/aStt.fasta
deleted: src/prokov/lxpack/tests/aaS.fasta
deleted: src/prokov/lxpack/tests/aaSt.fasta
deleted: src/prokov/lxpack/tests/aaStt.fasta
new file: src/repseek/repseek-2014.09.tgz
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2025-03-05 21:56:39 +01:00 |
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5d09615f27
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Makefile
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2025-03-01 18:28:55 +01:00 |
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6822901872
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Makefile
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2025-03-01 18:25:43 +01:00 |
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2c012eec8e
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first batch
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2025-03-01 16:15:28 +01:00 |
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702442245e
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Re-add local version of hmmer for being able to process large sequences
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2023-06-12 17:43:11 +02:00 |
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258db783c3
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copy every exonate binaries and not only exonarate
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2023-06-12 17:09:14 +02:00 |
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bee9fd0a0d
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Update Makefile to remove compilation of some software programs easily installable using package managers
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2023-06-12 09:18:45 +02:00 |
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2ff37343b6
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Switch to the system parallel
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2023-05-15 15:36:52 +02:00 |
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06729511ad
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remove install from sources of gawk and tcsh
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2023-05-15 09:46:55 +02:00 |
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4680b4f4d3
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rename exonarate binary archive
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2023-05-15 08:52:47 +02:00 |
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857fe67bf2
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Add a precompiled version of exonerate
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2023-05-15 08:35:28 +02:00 |
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18453afeae
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Add dependency to GNU parallel
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2022-02-17 18:39:51 +01:00 |
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47800462da
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Add .DS_Store to the .gitignore files
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2018-05-11 16:52:21 +02:00 |
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136c9ee7f6
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Correct .gitignore files
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2018-05-11 16:35:28 +02:00 |
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812fdfa06f
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Switch to version 2.4.0 of exonerate
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2018-05-11 16:19:30 +02:00 |
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c691818059
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Changes in .gitignore
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2018-04-05 18:15:40 +02:00 |
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9070b54732
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Switch to clustal-omega version 1.2.4
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2018-04-05 18:02:01 +02:00 |
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9bcfa914fe
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Switch to version 1.2.38 of aragorn
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2018-04-05 18:01:01 +02:00 |
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c37c175fd8
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Switch to clustalo version 1.2.4
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2018-03-30 13:47:59 +02:00 |
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1d0600bd31
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Switch Aragorn to version 1.2.38
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2018-03-30 13:27:13 +02:00 |
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8113b80d47
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Add annotation of nuclear rDNA cistron
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2016-05-02 10:56:40 +02:00 |
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7d04371387
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Add ITSx to th src
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2016-04-28 10:08:10 +02:00 |
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69434c5b86
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Add the latest tcsh able to deal with large PATH (at least 4096)
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2016-04-13 16:21:50 +02:00 |
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b2cc474077
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Add the cd-hit program to the binaries
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2016-01-27 13:09:43 +01:00 |
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647695d2a2
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Patch a compilation bug for getopt
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2016-01-05 17:19:37 +01:00 |
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99865ad568
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Add the standard getopt external command allowing to deal with short and
long options in scripts
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2015-12-18 11:47:56 +01:00 |
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d09a1fc40a
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Ignore the build directory
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2015-11-29 19:03:54 +01:00 |
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a6ee2f0781
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corrected bug in ncbiblast src/build-system/Makefile.in.top
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2015-11-14 03:21:51 +01:00 |
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7cffc9b412
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corrected compilation bug muscle on linux
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2015-11-14 01:32:11 +01:00 |
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3acb2b4ea0
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squared src - added missing portclean targets
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2015-11-14 00:39:04 +01:00 |
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ac6dfb38e0
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squared several distro in src - clean target added
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2015-11-14 00:25:39 +01:00 |
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085a5ff2a7
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squared muscle
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2015-11-14 00:11:27 +01:00 |
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d52ebf0359
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squared hmmer distro
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2015-11-13 23:30:03 +01:00 |
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80d7027d70
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clean gawk distro
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2015-11-13 23:00:27 +01:00 |
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232f601c66
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Add gawk dans les binaries which not standard on mac at least
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2015-11-08 16:59:03 +01:00 |
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8d78a72687
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remove dev_config
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2015-11-08 15:00:11 +01:00 |
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efb9949075
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CDS detector added
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2015-11-08 14:28:57 +01:00 |
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8dab2d56b2
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CDS detector added
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2015-11-08 14:28:05 +01:00 |
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fb1158bcd4
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Add a forgeted Makefile
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2015-10-06 19:14:53 -03:00 |
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4e688d0a89
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add gitignore files
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2015-10-05 23:28:09 -03:00 |
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6f0ba35953
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Patch compilation of binaries
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2015-10-05 22:25:17 -03:00 |
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d298385685
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First commit - second part
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2015-10-02 21:13:16 +02:00 |
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