PASS1_LOOK_FOR_PSEUDO allowing for searching with stop in a second time (Pseudogene search). The PASS1_ALLOW_STOP is set back to 0 and the new PASS1_LOOK_FOR_PSEUDO is set to 1 Former-commit-id: 318327af6bdc3fbdfbe7f438ff7cbea22863a0ab Former-commit-id: a130baf2b1c3bf1158d367d3633b02600f04674a