Eric Coissac
2ff6ff3308
PASS1_LOOK_FOR_PSEUDO allowing for searching with stop in a second time (Pseudogene search). The PASS1_ALLOW_STOP is set back to 0 and the new PASS1_LOOK_FOR_PSEUDO is set to 1 Former-commit-id: 318327af6bdc3fbdfbe7f438ff7cbea22863a0ab Former-commit-id: a130baf2b1c3bf1158d367d3633b02600f04674a
# # ------------------------------------------ # ORG.Annot - Organelle Annotator # version 1.0.0 - Sept 2015 # ------------------------------------------ # # ------------------------- # -1- Installation # ------------------------- # # First check if binaries have been already compiled for your port # # $ scripts/check_port.sh # # if it prints : # # + checking port compilation OK # # then everything is fine # # if it prints : # # + port not yet compiled # # then, you should first compile binaries for your port # please consult: src/README.txt for details # # if it prints smthing like # * XXX version A.B.C (should be >= X.Y.Z) # * please consider installing XXX from src/_unix_tools_ # # then, you should first compile some unix tools binaries for your port # please consult: src/README.txt for details # # ------------------------- # -2- Distribution organisation # ------------------------- # # config : config file for (re)compiling tools # data : internal data files (e.g. ChloroDB) # detectors : features specific detector scripts # ports : binaries for various ports # scripts : main scripts directory # src : sources for (re)compiling tools # # ------------------------- # -3- Usage # ------------------------- # # note: all scripts are located in scripts, so you may add # this directory in your path # e.g. using csh # set path = ($path <ROOTDIR>/scripts) # # @TODO : scripts description # # test